PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo24G0032100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NF-YA

Protein Properties

Length: 185aa MW: 20117.2 Da PI: 11.3222

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo24G0032100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	99.7	2.9e-31	92	147	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++Il+RRq+Rak+e e+kl k+rkpylh+SRh hA+rR+Rg+gGrF Spipo24G0032100 92 GPVYVNAKQYRGILRRRQARAKAELENKL-VKARKPYLHKSRHLHAMRRARGCGGRF 147 69*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.5E-35	89	150	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.859	90	150	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.6E-27	93	147	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.4E-23	93	115	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	95	115	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.4E-23	124	147	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MQTAQSPQAM FLPWWVGSPP PPPSRSQPET FFRGGAAAAK LSGPTVQDAE KGPTAPPSFP 60 LVDHGYLDFA PYGTQIQDER TMLLPLTTPK EGPVYVNAKQ YRGILRRRQA RAKAELENKL 120 VKARKPYLHK SRHLHAMRRA RGCGGRFLNT KKAVAAQGEA ANGKAAAPLP PGMPAGFRRD 180 LRAQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	9e-19	91	152	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010247679.1	5e-43	PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
Refseq	XP_010247690.1	2e-43	PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X3
Swissprot	Q8LFU0	3e-30	NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBL	A0A1U7ZHJ4	1e-41	A0A1U7ZHJ4_NELNU; nuclear transcription factor Y subunit A-10-like isoform X1
TrEMBL	A0A1U7ZIX5	5e-42	A0A1U7ZIX5_NELNU; nuclear transcription factor Y subunit A-10-like isoform X3
STRING	XP_010247679.1	2e-42	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2307	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	9e-30	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	Spipo24G0032100

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]