PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo25G0001600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

MYB_related

Protein Properties

Length: 1208aa MW: 133855 Da PI: 8.6341

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo25G0001600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.3	2.1e-09	60	95	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e+++ a +++G++ Wk++a + +Rt ++ Spipo25G0001600 60 QWSKEELERFYVAYRKHGKD-WKKVAGVIR-NRTVDMV 95 6***************99.*****.*8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.87E-10	56	104	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-4	57	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.5E-5	59	98	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-7	60	99	IPR001005	SANT/Myb domain
CDD	cd00167	2.43E-5	61	95	No hit	No description
SMART	SM01135	3.4E-56	666	767	IPR033471	DIRP domain
Pfam	PF06584	2.4E-31	666	766	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1208 aa Download sequence Send to blast
MISEYAKCDG ERDLFMSPTR KPRIINPRFK HGEESPDKDG CNTNKNKTKK RKLSDMLGSQ 60 WSKEELERFY VAYRKHGKDW KKVAGVIRNR TVDMVEALYN MNRAYLSLPD GTATVAGLIA 120 MMTDHYNILE GSDSDDDSND ELQTSNKPPK RARGKLHANV SKGSATSYPD LLQYQSTTSN 180 YGCLSLLKKK RSGGSRPRAV GKRTPRFPVS YTYDREDMKM LSPSKLVKSE RDADEDGIHV 240 AALALAEASQ RAGSPQVSRT PIRTEHTKSS PVQSGERKHV ELEASNSRFN ALWKDGYCSE 300 GSLGSVEAET GDFALEPGYH HDSENGHPLE TKRKVRKSKG KNPKTAGIES NMLDDDVREA 360 CSGTEEGPSN RGSKAEIDSE VSDRKIVQSF QGSRKRNRQL FSGDESTALD ALQTLADLSF 420 NILLPGSAVE SESSVQPKED KKVVDVVEKF PPPEVTTKGR KDKNKASNKK AGPLYGTRKS 480 SKQRELSPDA KVSSEAKNAN HQPVRRIRKK QQKVGIAKNP KDEENEDTCP TESPVQQVVV 540 GESKKPSGKV KGGAHVPSQK LTKMIKTQEP ASSGSEVSRK LTDEHESIGH IPAENKVILT 600 SKQRNRRKMT LQRALMQEWK PSALVQEDRS GIYVNATSDK AVDVKAKLSH CLSSPLLRRW 660 CMFEWFYSAI DYPWFAKSEF VEYLDHVGLG HVPRLTRVEW GVIRSSLGKP RRLSGQFLRE 720 ERYKLEQYRE SVRIHYTELR GGLREGLPTD LARPLSVGQR VIACHPKTRE IHDGSILTVD 780 RSKCRVQFDR PELGVEFVMD IDCMPLNPSE NMPDALRRKN LVVDKISEAF YETKQFSQQQ 840 DRRFGESLRL LSSENVENGE GNCNVASSSY PMNTLMKQAN GDTIDAIAVA KAAANEVVAA 900 AQQAMYAQPC TLAQIQAREA DIRALAELTR ALDKKQLSGS GAGLSLESQE ALLIELKNMN 960 EEVSAKQKGG ESIKEFEHFR KQYAMVLLQL RDANDQESCI REGESLVAAA LVFLRQRNTY 1020 QGNAGASWPK PSENSVGPTG NQGSLGRSSF PCQDPGTHVL DIIEGSRRKA RAMVDVAMTA 1080 MSSVREGEDA FARIGEALDS CKDHAVKLEP PALQAPSGAE CWVPNELISS CVATLLMIQT 1140 CTERQDPPAE VAQILDSAVT TLEPCCPQNL PIYREIEVFM GIVKNQMLAK VPTLTSSLPA 1200 SSELPIL*

Sequence ? help Back to Top

Protein Sequence Length: 1208 aa Download sequence Send to blast

MISEYAKCDG ERDLFMSPTR KPRIINPRFK HGEESPDKDG CNTNKNKTKK RKLSDMLGSQ  60
WSKEELERFY VAYRKHGKDW KKVAGVIRNR TVDMVEALYN MNRAYLSLPD GTATVAGLIA  120
MMTDHYNILE GSDSDDDSND ELQTSNKPPK RARGKLHANV SKGSATSYPD LLQYQSTTSN  180
YGCLSLLKKK RSGGSRPRAV GKRTPRFPVS YTYDREDMKM LSPSKLVKSE RDADEDGIHV  240
AALALAEASQ RAGSPQVSRT PIRTEHTKSS PVQSGERKHV ELEASNSRFN ALWKDGYCSE  300
GSLGSVEAET GDFALEPGYH HDSENGHPLE TKRKVRKSKG KNPKTAGIES NMLDDDVREA  360
CSGTEEGPSN RGSKAEIDSE VSDRKIVQSF QGSRKRNRQL FSGDESTALD ALQTLADLSF  420
NILLPGSAVE SESSVQPKED KKVVDVVEKF PPPEVTTKGR KDKNKASNKK AGPLYGTRKS  480
SKQRELSPDA KVSSEAKNAN HQPVRRIRKK QQKVGIAKNP KDEENEDTCP TESPVQQVVV  540
GESKKPSGKV KGGAHVPSQK LTKMIKTQEP ASSGSEVSRK LTDEHESIGH IPAENKVILT  600
SKQRNRRKMT LQRALMQEWK PSALVQEDRS GIYVNATSDK AVDVKAKLSH CLSSPLLRRW  660
CMFEWFYSAI DYPWFAKSEF VEYLDHVGLG HVPRLTRVEW GVIRSSLGKP RRLSGQFLRE  720
ERYKLEQYRE SVRIHYTELR GGLREGLPTD LARPLSVGQR VIACHPKTRE IHDGSILTVD  780
RSKCRVQFDR PELGVEFVMD IDCMPLNPSE NMPDALRRKN LVVDKISEAF YETKQFSQQQ  840
DRRFGESLRL LSSENVENGE GNCNVASSSY PMNTLMKQAN GDTIDAIAVA KAAANEVVAA  900
AQQAMYAQPC TLAQIQAREA DIRALAELTR ALDKKQLSGS GAGLSLESQE ALLIELKNMN  960
EEVSAKQKGG ESIKEFEHFR KQYAMVLLQL RDANDQESCI REGESLVAAA LVFLRQRNTY  1020
QGNAGASWPK PSENSVGPTG NQGSLGRSSF PCQDPGTHVL DIIEGSRRKA RAMVDVAMTA  1080
MSSVREGEDA FARIGEALDS CKDHAVKLEP PALQAPSGAE CWVPNELISS CVATLLMIQT  1140
CTERQDPPAE VAQILDSAVT TLEPCCPQNL PIYREIEVFM GIVKNQMLAK VPTLTSSLPA  1200
SSELPIL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931795.1	0.0	protein ALWAYS EARLY 2 isoform X2
TrEMBL	A0A1D1ZG62	0.0	A0A1D1ZG62_9ARAE; Protein ALWAYS EARLY 3
STRING	XP_008806732.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6230	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Spipo25G0001600