PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo26G0017600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 251aa MW: 28703.5 Da PI: 7.5406

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo26G0017600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174	4.2e-54	10	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+++d++++ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ Spipo26G0017600 10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIRDIDLNRIEPWDLKDrcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATNAGFWKATGRDKS 102 69**************************.9***********943444442456******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrl Spipo26G0017600 103 IHLTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139 *********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.02E-55	7	144	IPR003441	NAC domain
PROSITE profile	PS51005	52.545	10	165	IPR003441	NAC domain
Pfam	PF02365	1.2E-28	11	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MAPGNGPLSV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIRDIDLNRI EPWDLKDRCR 60 IGSGPQNEWY FFSHKDKKYP TGTRTNRATN AGFWKATGRD KSIHLTNSKR IGMRKTLVFY 120 TGRAPHGQKT DWIMHEYRLD EDQSDIQLLS SESIGTPFMP SVSLNLSDIE CSQNLMKLTT 180 GEGGVLQQEK LNADWSILEK LLASHQNLDQ IFQSRFNLAA PSQSMDNGCS VQRFPLQYLG 240 CETDFLKFTK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-46	8	141	15	144	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-46	8	141	15	144	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-46	8	141	15	144	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-46	8	141	15	144	NO APICAL MERISTEM PROTEIN
3swm_A	2e-46	8	141	18	147	NAC domain-containing protein 19
3swm_B	2e-46	8	141	18	147	NAC domain-containing protein 19
3swm_C	2e-46	8	141	18	147	NAC domain-containing protein 19
3swm_D	2e-46	8	141	18	147	NAC domain-containing protein 19
3swp_A	2e-46	8	141	18	147	NAC domain-containing protein 19
3swp_B	2e-46	8	141	18	147	NAC domain-containing protein 19
3swp_C	2e-46	8	141	18	147	NAC domain-containing protein 19
3swp_D	2e-46	8	141	18	147	NAC domain-containing protein 19
4dul_A	3e-46	8	141	15	144	NAC domain-containing protein 19
4dul_B	3e-46	8	141	15	144	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010915633.1	1e-124	NAC domain-containing protein 76
Swissprot	Q5Z6B6	5e-93	NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBL	M0S9J3	1e-133	M0S9J3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P20020_001	1e-134	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3461	37	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	1e-92	NAC family protein

Link Out ? help Back to Top
Phytozome	Spipo26G0017600

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]