PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo26G0021600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 306aa    MW: 33283 Da    PI: 7.6723
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo26G0021600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.81.7e-11184234555
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                      kr +r   NR +A+rsR RK+++i eLe+ v +L++e +aL  ++  l  +
  Spipo26G0021600 184 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQ 234
                      8999*********************************99998877666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.7E-14180244IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.783182245IPR004827Basic-leucine zipper domain
PfamPF001703.9E-10184236IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.4E-14184238No hitNo description
SuperFamilySSF579591.41E-11184238No hitNo description
CDDcd147033.95E-23185235No hitNo description
PROSITE patternPS000360187202IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAQLPPKVPN ISPNWPNFGH QRAPSIGNFF PPAVTSSSPS PAAHPSWVDE FLDFSATKRG  60
AHRRSASDSI AFLEVPMIAT VEDCHRNEDG ARSSRLQEFD RLDDDQLMSM FSDDVPPSAP  120
SAPASSSNPS TPSDHNSIND EKTGAGSAAA EPPSQEAQST CKSEPGRSSE AVPAPAAETI  180
VDPKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTSLQTE VSALSPRVAF LDHQRSVLTM  240
GNSALKQRIA ALAQDKIFKD AHQEALKREI DRLRQVYQQQ SFKKMASAAT HASEPTSCAD  300
KELRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279202.11e-129PREDICTED: basic leucine zipper 61-like
SwissprotQ9M2K41e-100BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A1D1YKZ31e-148A0A1D1YKZ3_9ARAE; Transcription factor RF2a
STRINGXP_010279202.11e-128(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.18e-91bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]