PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo27G0007100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 584aa    MW: 60923.9 Da    PI: 5.1305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo27G0007100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.21.9e-15406452455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++ +E+rRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Spipo27G0007100 406 TNSVNEQRRRDRINEKMRALQELIPNC-----NKVDKASVLDEAIEYLKTLQ 452
                      68899*********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.456402451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-14405456No hitNo description
PfamPF000101.1E-12406452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17406461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-18408460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-14408457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MQGQSNRAAK SSSPTALPSF AGKAQERDGS RVASRYGSAD SAGKDFHAVG SLGQLGFGGG  60
QQDSDMAPWA SYPIEDYCLE FLSEFSAPNP SSLPATVPAS DRCISYGEAA LPGENGGGAR  120
GSGQFFSPPE ESLPLFPRIR SKDSEFSPHQ LPGGDLQAGK TQRHEQAPVK VAQPICGPGL  180
ANFSHFLRPS AAQAKAAAVV AEAAADLPNF DVRAGENAST AASSNPLEST LINPTSCSRS  240
FSQFHAESAP GSIAWADLDG ASAEQSGGDG EEDNSRLQNQ IDSASNPRPS AESPTCKSSS  300
FTGGAAADKH SEPVVASPSI CSASDAGAAP NDAQGKGKRK NQDAEDSVCH SEDLEDDSAE  360
AKKPSPGSKR SRAAEVHNLS ERVSPPSVAA AFSDALRNEF ISLGVTNSVN EQRRRDRINE  420
KMRALQELIP NCNKVDKASV LDEAIEYLKT LQMQLQIMSM GGGIYMPPMM VPAGIRAPHM  480
APFPPMGLGM GMGMGMGMGV GMGFGMGMVD ANGSPLVPAP PPPQYPCASV PATWNGILFC  540
LPNVIELNAI NLLALRYHSE LINSHFHICG SMQPCGESPH KVG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-39phytochrome interacting factor 3