PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo27G0009900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 243aa    MW: 26567.1 Da    PI: 8.6589
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo27G0009900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.14.2e-34138196159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vk+s+fprsYYrCt a+C vkk+vers+ dp++v++tYeg+Hnh+
  Spipo27G0009900 138 LDDGYRWRKYGQKPVKDSPFPRSYYRCTAASCGVKKRVERSSADPTTVVTTYEGQHNHS 196
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-34123198IPR003657WRKY domain
SuperFamilySSF1182903.66E-29130198IPR003657WRKY domain
PROSITE profilePS5081132.673133198IPR003657WRKY domain
SMARTSM007749.7E-39138197IPR003657WRKY domain
PfamPF031062.5E-26139195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEQNNGGEFY YLHPHDISIQ QQLSLPLDFP PPRPPPPQPR GFPSASDEAA AELPSSSEVS  60
HFLATSNSSS TSSSSTEAAN DGNRSKSAAT VAADVGEDED VKPKQTSRKG GGGKGKKAQK  120
RQREPRFAFM TKSDIDHLDD GYRWRKYGQK PVKDSPFPRS YYRCTAASCG VKKRVERSSA  180
DPTTVVTTYE GQHNHSSPTG HHQHSGRLQL ATGDQGLLQD LLPQNFMRIS RESDTINQRE  240
AA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-29128198777Probable WRKY transcription factor 4
2lex_A1e-29128198777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3580523e-33AK358052.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1067K13.
GenBankAK3668373e-33AK366837.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2047E06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279385.11e-51PREDICTED: probable WRKY transcription factor 48
TrEMBLA0A438GHD02e-50A0A438GHD0_VITVI; WRKY transcription factor
TrEMBLD7SYJ22e-50D7SYJ2_VITVI; WRKY transcription factor
STRINGVIT_05s0077g00730.t014e-51(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-44WRKY DNA-binding protein 23