PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo28G0004200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 397aa    MW: 42818.7 Da    PI: 7.2258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo28G0004200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.5e-12329374655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + a++L  AveYI++L+
  Spipo28G0004200 329 SIAERIRRTRISERIRRLQELVPNM----DKQTNTADMLDFAVEYIRELE 374
                      689*********************7....688***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.704323373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-15326385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.11E-12327378No hitNo description
Gene3DG3DSA:4.10.280.101.2E-14328385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9329374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12329379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MYGSPANSKD LNLRIPAASI KHGKEESDLG QNQQQQQMSS GLLRYRSAPS SLLGEMCESF  60
FPPRSSTGEA ETMFARFVSP DLRDQIGEKS SPHRSIRFLP EIEREVGEAS HQQNGGFPSS  120
APHVAAYHAS SSPVTVEGSY RVATSTAMES ERESGGARRS APIRQSSSPA SLFSLLSAEN  180
DFSVLSGIGG FRSGSCSNGE ANPSSSRMKC QISFSSRQSS SSSLMSQISE IGGEAMAGSS  240
PEDGGRCFIP GLPVAAWDDP SDGFSIGMKR SRDPSEAQIG EAGSGHIPTL AHHFSLPKTS  300
SEMAAVLQFQ DAIPCKIRAK RGCATHPRSI AERIRRTRIS ERIRRLQELV PNMDKQTNTA  360
DMLDFAVEYI RELEEQVKIL SESKTNCTCS SSKEKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913124.11e-136transcription factor bHLH130
TrEMBLA0A1D1YA111e-148A0A1D1YA11_9ARAE; Transcription factor bHLH130
STRINGXP_008776552.11e-130(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-39bHLH family protein