PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo28G0010500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 151aa    MW: 16281.2 Da    PI: 6.3442
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo28G0010500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.5e-19756255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  Spipo28G0010500  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMCG 56
                     69******9.**********8.....334**********************97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.93E-34664No hitNo description
Gene3DG3DSA:3.30.730.108.8E-35765IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-21765IPR016177DNA-binding domain
PROSITE profilePS5103221.035764IPR001471AP2/ERF domain
PfamPF008471.5E-11756IPR001471AP2/ERF domain
SMARTSM003802.1E-39770IPR001471AP2/ERF domain
PRINTSPR003672.2E-11819IPR001471AP2/ERF domain
PRINTSPR003672.2E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MGRPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGARAR  60
TNFPQNPNAP PQEASSFLSA PLMAKLHRCH LASLQAAQLT SPPAGSGAAA GSDPAAAAAA  120
AQELDEDHIE QMIDELLDSG YSMELCSPSP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-18669468ATERF1
3gcc_A9e-18669468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265679.13e-63PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_010929116.13e-63ethylene-responsive transcription factor ERF003
RefseqXP_021890671.14e-63ethylene-responsive transcription factor ERF003-like
RefseqXP_022842116.12e-63ethylene-responsive transcription factor ERF003-like
RefseqXP_028782678.13e-63protein PPLZ02-like
SwissprotQ94AW51e-61ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2R6QZC23e-65A0A2R6QZC2_ACTCH; Ethylene-responsive transcription factor
TrEMBLA0A2R6QZE23e-65A0A2R6QZE2_ACTCH; Ethylene-responsive transcription factor
STRINGevm.model.supercontig_127.41e-62(Carica papaya)
STRINGXP_010265679.11e-62(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.19e-50ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]