PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo28G0010800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARR-B
Protein Properties Length: 689aa    MW: 74109.6 Da    PI: 5.3078
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo28G0010800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.14.7e-24213262151
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                      kpr++W+ +LH++Fv av++L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQ
  Spipo28G0010800 213 KPRVVWSVDLHRKFVAAVNEL-GIDKAVPKRILELMNVERLTRENVASHLQ 262
                      79*******************.***************************** PP
2Response_reg791.7e-26261341109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ ++ll+++l++ +y +v++++++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++ + + + +  
  Spipo28G0010800  26 VLAVDDDPTCLRLLESLLRRCQY-HVTTTSQAITALKLLRENKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDTKAVMKGIAH 117
                      799********************.***************888888*******************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel++
  Spipo28G0010800 118 GACDYLLKPVRIEELRN 134
                      ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.2E-4223177No hitNo description
SuperFamilySSF521721.85E-3623148IPR011006CheY-like superfamily
SMARTSM004481.7E-3224136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.27625140IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.4E-2426135IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.27E-2148140No hitNo description
Gene3DG3DSA:1.10.10.604.1E-25210270IPR009057Homeodomain-like
PROSITE profilePS5129410.597210269IPR017930Myb domain
SuperFamilySSF466891.97E-14211264IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-22213262IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MTVEERMDPV LKDAAPRDQF PVGMRVLAVD DDPTCLRLLE SLLRRCQYHV TTTSQAITAL  60
KLLRENKDKF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANSDTKA VMKGIAHGAC  120
DYLLKPVRIE ELRNIWQHVI RRKKLDRKDP CDRDNGDARE KPLHVGSDGR QGPGSEASDS  180
NGTFSRKRKD QNEEDDDSED NGNETDDPSA QKKPRVVWSV DLHRKFVAAV NELGIDKAVP  240
KRILELMNVE RLTRENVASH LQARLYLKRI HAVTSQQSNI FAALGGKESY LAMSPIDGMG  300
GFNAAARPRQ LPTLASFQSS GTAGRLNSLP GIGLHGLSSS GMIQLGHSNS IHDLGKIPPT  360
NLPGGIHQGG LLNRMPTAAE LNQFQQLKAA NEASNQLLGG YAESTSLGGS SSLFLSPTSS  420
NIILQQQQQQ QHGEAGLRPP LRTAALQPNP FPQLPDLGRC GDAWHDTSAA LSVYSACGLP  480
PGVPLGNMNL SSGRSFKGGS SPMAAPGDGG AQLDASQCGV AGPAMLDRFA MGLADPDAGS  540
PLLLPAAADE PREVSNFGYA GSSAQQRLVD PGQGQHERTL RVDPSLSCSL ANHDGLSDRF  600
YGKRLDFGMI DQPALSMPFL AQGPDDEKPV KPKNDSPVGP SRLEPPGVDP NAGSYDDLVN  660
AMIKMESDDI MLMEGDLGCD LYSLETCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-22209270163ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929130.10.0two-component response regulator ORR22
RefseqXP_019707776.10.0two-component response regulator ORR22
RefseqXP_019707777.10.0two-component response regulator ORR22
TrEMBLA0A1D1Z0N20.0A0A1D1Z0N2_9ARAE; Two-component response regulator ARR12
STRINGXP_008794326.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-110response regulator 12