PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo28G0011500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 279aa    MW: 30641.5 Da    PI: 8.2027
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo28G0011500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.82.1e-2897156159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK  k+++ pr+Y+rC+ + +Cpvkkkv+r+aed+++++ tYegeH+h+
  Spipo28G0011500  97 VKDGYQWRKYGQKITKDNPSPRAYFRCARSpDCPVKKKVQRCAEDKTMLVATYEGEHTHK 156
                      58**************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.65992158IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-2993158IPR003657WRKY domain
SuperFamilySSF1182902.09E-2595158IPR003657WRKY domain
SMARTSM007742.7E-3297157IPR003657WRKY domain
PfamPF031062.6E-2498156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGTLPCYLQK EEVRVLEEEL ERVSRENQEL KTIIHTIRSS CDNLQAQTRM MERESEGGGE  60
SCLSHRSLAK RREMEPLRPN SYRVLVRTDP SDSSLIVKDG YQWRKYGQKI TKDNPSPRAY  120
FRCARSPDCP VKKKVQRCAE DKTMLVATYE GEHTHKAPGA DSSSPPASGC AAASLSDEPA  180
MSAAVNVDLT LSGTSPERKR PQSFPEMALP RKEKKTGDDK HDDGSGERRT DGAAAFVGGA  240
CRSLEDYMSS LMRDPGFTSA LAGALARSFL LPPRPTSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20961581374WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1XD722e-77A0A1D1XD72_9ARAE; Putative WRKY transcription factor 40 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-36WRKY DNA-binding protein 40