PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo28G0022100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

LBD

Protein Properties

Length: 134aa MW: 15314.4 Da PI: 7.3041

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo28G0022100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.3	4.7e-42	6	103	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaC++lrr+C++dCvlapyfp+++p +fa+vh++FGasnv+++l+ +p e+r +a++s++yeA +r+rdPvyG+vg+i++lqq+++ ++ el Spipo28G0022100 6 RCAACRYLRRRCTEDCVLAPYFPSTHPDRFACVHRIFGASNVSRMLQLVPVEQRGQAADSIAYEAYWRMRDPVYGCVGIITRLQQEIQASQREL 99 6********************************************************************************************* PP DUF260 95 allk 98 a+++ Spipo28G0022100 100 AETR 103 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.435	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-41	6	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MSNSTRCAAC RYLRRRCTED CVLAPYFPST HPDRFACVHR IFGASNVSRM LQLVPVEQRG 60 QAADSIAYEA YWRMRDPVYG CVGIITRLQQ EIQASQRELA ETRALVAMNA AEETRQREIP 120 AAWDLVSFPS DDFH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-34	7	99	12	104	LOB family transfactor Ramosa2.1
5ly0_B	1e-34	7	99	12	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020264151.1	1e-56	LOB domain-containing protein 24-like
Swissprot	P59468	2e-43	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	M0RPH8	9e-54	M0RPH8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P04980_001	1e-54	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-35	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Spipo28G0022100