PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo28G0022400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 137aa    MW: 15348.5 Da    PI: 6.8199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo28G0022400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.2e-132570555
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                     +n+ E++RR+r+N+ + +Lr+++P+ +      K++K+++++ A+ YI++Lq
  Spipo28G0022400 25 KNITEKNRRKRLNETLYNLRSVVPNiS------KMDKISVVKDAISYIQKLQ 70
                     79***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-162077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.8592069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.57E-102474No hitNo description
PfamPF000101.0E-102570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-142572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-142675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MMSFSEYDLE LQDDGGCSSS SAAPKNITEK NRRKRLNETL YNLRSVVPNI SKMDKISVVK  60
DAISYIQKLQ EDERTILAAV GPPQEERKKK MKAVSRRDPN APPSIEVLEV DKEEKAQLKE  120
KIEMAIAEID SPSRPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18696RKKKMKAVSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017699987.11e-29transcription factor bHLH35-like isoform X2
TrEMBLA0A2H3ZU563e-28A0A2H3ZU56_PHODC; transcription factor bHLH35-like isoform X2
STRINGAquca_018_00039.15e-21(Aquilegia coerulea)
STRINGGSMUA_Achr7P16000_0017e-21(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.24e-19bHLH family protein