PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo28G0022700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HB-PHD
Protein Properties Length: 557aa    MW: 62944 Da    PI: 5.0788
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo28G0022700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.51.7e-11356400953
                      HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      +e +e L ++F++n  ps++ +e+L+++lgL+ ++V+ WF+N R+
  Spipo28G0022700 356 REAVEKLRQVFAQNELPSKAVKEDLSRELGLSAEKVSKWFKNARY 400
                      67899***************************************7 PP
2PHD39.61.2e-13104157151
                      SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSSTBSSHHHHTT CS
              PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpegewlCeeCkek 51 
                      +C+ C++  + ++++++lCd +C+++fH+kCl+++le+ +  ++ wlC+ C++k
  Spipo28G0022700 104 FCAKCKSreAFSDNDIILCDgTCNRAFHQKCLEPPLEKIPPGDQGWLCKFCECK 157
                      699***965556********56***************8888888*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.17E-1595160IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.6E-14100158IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.976102157IPR019787Zinc finger, PHD-finger
CDDcd155047.72E-28104154No hitNo description
PfamPF006285.6E-11104157IPR019787Zinc finger, PHD-finger
SMARTSM002492.1E-9104155IPR001965Zinc finger, PHD-type
PROSITE patternPS013590105154IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007112.762345405IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-12345399IPR009057Homeodomain-like
SMARTSM003894.5E-10347409IPR001356Homeobox domain
SuperFamilySSF466891.84E-11348413IPR009057Homeodomain-like
CDDcd000862.72E-9348400No hitNo description
PfamPF000464.8E-9356400IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MRKRKRKAIV LDEAARLQRR TRYLLVRMKL EQNLIDAYSA EGWKGQSREK IRPENELQRA  60
RKQILNCKVG IRDAIHQLEL QSSEGCIEDS VMHPDGSVHH EHIFCAKCKS REAFSDNDII  120
LCDGTCNRAF HQKCLEPPLE KIPPGDQGWL CKFCECKMEI LEAVNAHLGT SFSVNSRWED  180
IFEEAAASPE GENAYLDPAQ DWPSEDSEDD DYNPEINEKN NSVTGNDEKT RGDDACSSSD  240
SCCCSDEAGF ESQRLVNDGD LDAMNFRRQR RDVDYRKLYD EMFGKDQHEN EQSEDEDWGP  300
RSRRQRRRSR PESNDGADNG SCGDADQEPE EQFNTDSQMR PPCISQERKC LFRIPREAVE  360
KLRQVFAQNE LPSKAVKEDL SRELGLSAEK VSKWFKNARY AALKVRKAQK PPFDFPFQAE  420
GSEVLGDYLR GVGTRVGNKG RSDVEMERGS HLPASGRSPQ TTSPQKSVSP ASKEMHEDVD  480
PIRENRLAAA DDPTNPPERT AGAGEGRSPL LDEMERLCSL YEKITRLKAA LRASGEPVSA  540
GPLIVYLPVA ELREKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
116RKRKRK
2302307RRQRRR
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929360.10.0pathogenesis-related homeodomain protein
SwissprotP487851e-136PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A1D1ZFD20.0A0A1D1ZFD2_9ARAE; Pathogenesis-related homeodomain protein
STRINGXP_008798084.11e-174(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-132pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]