PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo28G0024500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 400aa    MW: 43654 Da    PI: 6.5903
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo28G0024500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.54.5e-16160214360
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                      +lkr rrk +NRe+ArrsR+RK+a+++ Le  v++L +eN +L    ++l + +++l+
  Spipo28G0024500 160 DLKRMRRKVSNRESARRSRRRKQAQLADLELQVDQLRGENASLY---KQLMDASQQLT 214
                      69**************************************9999...77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.5E-11154214No hitNo description
SMARTSM003381.4E-11158222IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.323160213IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-11161212No hitNo description
PfamPF001701.1E-13161210IPR004827Basic-leucine zipper domain
PROSITE patternPS000360165180IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MERAEGELPS MKRSGSDWDL EALLHPQTST TTSPAGATSG STMREDLLLR AGGEDLSFDF  60
AGSRRMHLSV VLLRQKCSSK SGEIFLKFLQ SFTNKILAAE HSTSLIFWVP HEYFGSPTSS  120
HKPKFTDIQA PGITSGSEQS DDESLDIEAG SCEQSTDAID LKRMRRKVSN RESARRSRRR  180
KQAQLADLEL QVDQLRGENA SLYKQLMDAS QQLTDAATDN RVLKSDVEAL RVKVGISAPF  240
EQRTNSPISE LYFQVWALES GHKIPRLILH WISQVKMAED LVTRGSLAFT LNNLLQSPAV  300
APQLPSAHHV CRASELPPPV GVQGDEGRYA GMGVNGQLQP AGMEAGEHGG NSQGSKSSQS  360
QSMERLPGLE QLQSRIAGDI SSCGSDMWPW ASHVVPVSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164180RRKVSNRESARRSRRRK
2174181RRSRRRKQ
3176181SRRRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1Z0581e-121A0A1D1Z058_9ARAE; Basic leucine zipper 9
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.18e-35basic leucine zipper 9