PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo29G0013700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bZIP

Protein Properties

Length: 407aa MW: 42327.1 Da PI: 5.1891

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo29G0013700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.6e-10	230	287	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l ++ a l +e Spipo29G0013700 230 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLYQRDTAGLSTE 287 9******************************************999998887777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.9E-15	226	290	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.576	228	291	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.2E-10	230	281	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.6E-8	230	296	No hit	No description
Pfam	PF00170	2.2E-9	230	287	IPR004827	Basic-leucine zipper domain
CDD	cd14703	9.38E-26	231	282	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MQARTPDPPY PKADLSPGPP NSNGIARSVA NPVPSLTDVP PRSPPAGGAA APAVPPGFGN 60 PSAGLSPSST RGPHHRRAQS ELAFRISEEL DLGSGDPLSS GFDEIGSEDD LFCTYMDVEK 120 MGCREEECGS GSLGNGSWGD RAEAGSRMSL QPGGTEVGQG DNAVRAGAVS VALTASTVPR 180 PKHRYSNSVD GSVLFSSALT KAEGPFGEVA EAKKAMPPDK LAELAAIDPK RAKRILANRQ 240 SAARSKERKA RYISELERKV QTLQTEATTL SAQLTLYQRD TAGLSTENAE LKMQLQAMEQ 300 QAQLRDALNE ALKLEVERLK IATGEPLGSG EGFGAQPEPF GSSGFFALSE QQQQQQALRR 360 PPPGPTQFPG GAAAAAGLQG LMGGPPQAPV KSEGSPISAS ESSSSF*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MQARTPDPPY PKADLSPGPP NSNGIARSVA NPVPSLTDVP PRSPPAGGAA APAVPPGFGN  60
PSAGLSPSST RGPHHRRAQS ELAFRISEEL DLGSGDPLSS GFDEIGSEDD LFCTYMDVEK  120
MGCREEECGS GSLGNGSWGD RAEAGSRMSL QPGGTEVGQG DNAVRAGAVS VALTASTVPR  180
PKHRYSNSVD GSVLFSSALT KAEGPFGEVA EAKKAMPPDK LAELAAIDPK RAKRILANRQ  240
SAARSKERKA RYISELERKV QTLQTEATTL SAQLTLYQRD TAGLSTENAE LKMQLQAMEQ  300
QAQLRDALNE ALKLEVERLK IATGEPLGSG EGFGAQPEPF GSSGFFALSE QQQQQQALRR  360
PPPGPTQFPG GAAAAAGLQG LMGGPPQAPV KSEGSPISAS ESSSSF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010921141.2	1e-110	transcription factor RF2b
Swissprot	Q6S4P4	2e-90	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A1D1XJK3	1e-127	A0A1D1XJK3_9ARAE; Transcription factor RF2b (Fragment)
STRING	XP_008808308.1	1e-108	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	9e-77	bZIP family protein

Link Out ? help Back to Top
Phytozome	Spipo29G0013700

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]