PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo29G0015400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 502aa    MW: 53400.1 Da    PI: 7.8742
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo29G0015400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-32210268160
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      ldDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+  ++ ++ei+Y+g+Hnh+k
  Spipo29G0015400 210 LDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERNM-EGAITEIVYKGHHNHPK 268
                      59****************************************.***************85 PP
2WRKY106.31.5e-33354412159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Cts gCpv+k+ver+++d ++v++tYeg+Hnh+
  Spipo29G0015400 354 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSMGCPVRKQVERASHDLRAVITTYEGKHNHD 412
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-28204269IPR003657WRKY domain
PROSITE profilePS5081123.95205269IPR003657WRKY domain
SuperFamilySSF1182903.79E-25206269IPR003657WRKY domain
SMARTSM007745.0E-35210268IPR003657WRKY domain
PfamPF031068.4E-25211267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-37339414IPR003657WRKY domain
SuperFamilySSF1182901.7E-29346414IPR003657WRKY domain
PROSITE profilePS5081138.366349414IPR003657WRKY domain
SMARTSM007742.5E-39354413IPR003657WRKY domain
PfamPF031063.7E-26355412IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MASAAGSPPV GFSFSELLNR GVQDGAGGCT KPPPASCGLA GAGMPKFKSL HPPSLPISPA  60
ALSPSSYFSM LAGLSPTELL DSPVLLSSSG VLPSPTTGTL PAQQLNWKAS SNSYPDFSFQ  120
THPARSSDSA SAFPNSSGTT SLGVQQQQQQ QKQDQWMYQE PGNRAAAAAV PDQVLPNQTS  180
SSPEVSSVGY ESDCCHPDRG APAVNERRSL DDGYNWRKYG QKQVKGSENP RSYYKCTYPN  240
CPTKKKVERN MEGAITEIVY KGHHNHPKPQ CARRNSCSQQ ICHPTAGGSV APVDSPATPE  300
NSSLSFGGEE IDDDDEPDTK RRKNGEHEGI SAPANKAAKE PRVVVQTTSD IDILDDGYRW  360
RKYGQKVVKG NPNPRSYYKC TSMGCPVRKQ VERASHDLRA VITTYEGKHN HDVPAARGSG  420
LPAVGPPGGG GAAAVTAIRP SATAGHSFSG RNQSSGGQAP FTLEMVHGHQ GPFSFSNPPE  480
SFFSRAKDEP RDDLFVESLL C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-35200415778Probable WRKY transcription factor 4
2lex_A6e-35200415778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921056.11e-171WRKY transcription factor WRKY24
SwissprotQ6B6R41e-120WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0M4PNU91e-170A0A0M4PNU9_9MAGN; Transcription factor WRKY33
STRINGXP_008804160.11e-162(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.15e-97WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]