PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo29G0016000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

LBD

Protein Properties

Length: 115aa MW: 12483.1 Da PI: 5.0089

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo29G0016000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	58.8	1.5e-18	3	56	47	100
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+ ql+ +la++++e Spipo29G0016000 3 QELPFQQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVTQLQMQLAVAQAE 56 68899*********************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.298	1	57	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.6E-16	3	54	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
HRQELPFQQR ADAVSSLVYE ANARMRDPVY GCVGAISYLQ NQVTQLQMQL AVAQAEILCI 60 QMQQEAAGLG SHAMEADEKS FLLHGGLAGV PQFMSFGSSS NVTQDPPKKE SLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-18	3	58	57	112	LOB family transfactor Ramosa2.1
5ly0_B	5e-18	3	58	57	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010921015.1	2e-54	LOB domain-containing protein 12
Swissprot	Q8LBW3	4e-36	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2H3YVF9	8e-53	A0A2H3YVF9_PHODC; LOB domain-containing protein 12
STRING	XP_008804108.1	1e-53	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-38	LBD family protein

Link Out ? help Back to Top
Phytozome	Spipo29G0016000

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]