PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo29G0021500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 183aa    MW: 19000.5 Da    PI: 8.8087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo29G0021500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000864769123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+++F++   L  H  +H
  Spipo29G0021500 47 FECKTCNRRFPSFQALGGHRASH 69
                     89**********99999998887 PP
2zf-C2H210.80.001597119123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  Fs    L  H+r+H
  Spipo29G0021500  97 HECSICGLEFSIGQALGGHMRRH 119
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.56E-945119No hitNo description
PfamPF139122.6E-134671IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8474774IPR007087Zinc finger, C2H2
SMARTSM003550.134769IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PfamPF139121.5E-1096121IPR007087Zinc finger, C2H2
PROSITE profilePS501579.36997124IPR007087Zinc finger, C2H2
SMARTSM003550.3297119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MKRLRTGREG EVESINLANV LVLLSRGSGG GGAVALEAAN HGQGRVFECK TCNRRFPSFQ  60
ALGGHRASHK KPRLGGEQNG QAAGPAPAAT PGKPRVHECS ICGLEFSIGQ ALGGHMRRHR  120
AASDSLRAAA PPGEAASPPV GEKQTELGLA LELDLNLPPS NSEADFRSLN LGLGIPMVDC  180
FH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402337.19e-55PREDICTED: zinc finger protein ZAT12-like
RefseqXP_022995602.12e-54zinc finger protein ZAT12-like
TrEMBLA0A444G6S63e-53A0A444G6S6_ENSVE; Uncharacterized protein
TrEMBLM0T2H92e-53M0T2H9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P28550_0013e-54(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-24C2H2 family protein