PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo29G0029200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 211aa    MW: 22757.1 Da    PI: 8.8745
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo29G0029200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.41.9e-23957149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ien+  rqv fskRr g++KKA+ELS+LC+ae+ v++fs+ gk++ +
  Spipo29G0029200  9 KKIENEEARQVCFSKRRSGLFKKASELSILCGAEIGVVVFSPAGKVFSF 57
                     68********************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-29173IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.922161IPR002100Transcription factor, MADS-box
CDDcd002652.09E-41274No hitNo description
PRINTSPR004042.9E-22323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGRQKIEIKK IENEEARQVC FSKRRSGLFK KASELSILCG AEIGVVVFSP AGKVFSFGHP  60
SVETVVDRFL GEPGPGGAVV PSAAPPHPAF KDLNRQHTEL SNRLEVEKKK KEEAEKALKA  120
TGEHYWRDLD ADGLGLEELE RFRLSVDLLK GRLAQRAEKL LLEAATPAAG SAPTPGSLGE  180
FAGRNPFLVK EEGSGVVFCR GGFGLPHGLR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-17175175MEF2 CHIMERA
6byy_B6e-17175175MEF2 CHIMERA
6byy_C6e-17175175MEF2 CHIMERA
6byy_D6e-17175175MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104108.13e-57agamous-like MADS-box protein AGL61
TrEMBLA0A199ULX03e-55A0A199ULX0_ANACO; Agamous-like MADS-box protein AGL61
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-25AGAMOUS-like 61