PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo2G0001800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

YABBY

Protein Properties

Length: 103aa MW: 11870.4 Da PI: 10.5025

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo2G0001800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	101.7	1.5e-31	11	95	76	160
YABBY 76 kveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 + +++nl+s ++ + s+s+ s+ + n+ e+ +++ + rPPekrqrvPs+ynrfikeeiqrika+nP ishreafs aakn Spipo2G0001800 11 QLQSHNLRSLGYSHMCGSSSRGSTIPTINSAENDQHQLLIRRPPEKRQRVPSTYNRFIKEEIQRIKANNPAISHREAFSSAAKNI 95 44555555555555555555555444455555555666699******************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.7E-30	28	94	IPR006780	YABBY protein
SuperFamily	SSF47095	4.04E-5	50	90	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
YLTLFSMEYQ QLQSHNLRSL GYSHMCGSSS RGSTIPTINS AENDQHQLLI RRPPEKRQRV 60 PSTYNRFIKE EIQRIKANNP AISHREAFSS AAKNISGRFI YLS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010247861.1	2e-30	PREDICTED: putative axial regulator YABBY 2 isoform X2
Swissprot	Q10FZ7	4e-25	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A1D1Z4Z6	7e-33	A0A1D1Z4Z6_9ARAE; Protein YABBY 2
STRING	XP_008778120.1	7e-30	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	8e-27	YABBY family protein

Link Out ? help Back to Top
Phytozome	Spipo2G0001800