PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0009000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family LBD
Protein Properties Length: 329aa    MW: 35788.9 Da    PI: 9.7777
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0009000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260721.2e-22215288173
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPv 73 
                     +C aCk+l++kC k+Cv+ap++ +e+ +++fa v k+FGasnv + l a+p  +r +++++++yeA+a ++dP 
  Spipo2G0009000 215 PCGACKFLQQKCDKGCVFAPHLVSERgAARFAGVYKVFGASNVFRQLMAVPMARRGETVATVCYEAQAHLSDPT 288
                     7*********************999989*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.895214315IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-22215288IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKASSPEMES HCEWSDGFVA FADELVVGAA TVGRISNESE MVTDVSKLPT RPGTRRQIPP  60
RKNTSETEKE SSAATSWFGS FRPERTYLVQ AQPARNLGLN LCPLVRAIVD PSVRIIPLHP  120
SEPSVCLVCI LCVRSLLKAP LTRAPSTSKL HIPHVGVRTG WGPDLRERRS NSQRERRAGQ  180
PTAKIVEAED TAAGRPRRSP RGGRSSQPAA EAVPPCGACK FLQQKCDKGC VFAPHLVSER  240
GAARFAGVYK VFGASNVFRQ LMAVPMARRG ETVATVCYEA QAHLSDPTAA KGLGARVLDL  300
FDMSRRKVDH VDERAPTIDG VQKYSDHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-162152881183LOB family transfactor Ramosa2.1
5ly0_B9e-162152881183LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.16e-28LOB domain-containing protein 20