PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0020700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARR-B
Protein Properties Length: 694aa    MW: 73986.3 Da    PI: 6.7076
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0020700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.31.7e-28222275155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Spipo2G0020700 222 KPRVVWSVELHQQFVNAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 275
                     79*******************.********************************8 PP
2Response_reg77.16.2e-26371451109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + +++l q+l+k +y +v+++  +++al +l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a    e++ + +k G
  Spipo2G0020700  37 VLVVDDDMTCLKILDQMLRKCEY-NVTVCPRATSALSILRERKssFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMMSADRRTEMVMKGIKHG 129
                     89*********************.***************988888*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+  eel +
  Spipo2G0020700 130 ACDYLIKPVRFEELKN 145
                     *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.0E-4234171No hitNo description
SuperFamilySSF521726.26E-3634165IPR011006CheY-like superfamily
SMARTSM004482.9E-2935147IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.89536151IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2337145IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.24E-2638150No hitNo description
Gene3DG3DSA:1.10.10.605.2E-30219280IPR009057Homeodomain-like
PROSITE profilePS5129411.313219278IPR017930Myb domain
SuperFamilySSF466891.15E-19219279IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-25222275IPR006447Myb domain, plants
PfamPF002496.6E-7224273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MAAMQKLGVA NLNAGNGLGL SKTEEDVPDQ FPAGLRVLVV DDDMTCLKIL DQMLRKCEYN  60
VTVCPRATSA LSILRERKSS FDLVISDVHM PDMDGFKLLE LVGLEMDLPV IMMSADRRTE  120
MVMKGIKHGA CDYLIKPVRF EELKNIWQHV VRKKWNENKD HEQSGSLEDS DKHRRGTDEA  180
EYTSSVNDAN DCNWKSQKKK RDAKEEEDDG ELENDDPSTS KKPRVVWSVE LHQQFVNAVN  240
QLGIDKAVPK RILELMNVPG LTRENVASHL QKFRLYLKRL SGVAQHQGAL HSSMCGPVDS  300
GTKVGPLSRL DIQSLAASGQ IPPQTLAALH AELLGRPSTG MVLPGLEQPV ILQPSLQGPK  360
CIPVDHREVT FGKPLMKCPS SMSKHFQPAG ITVEDMSPSG FGSWVPSHLS PVGNASIGGL  420
NGPQNGNMLV QMLQQQQQQQ PPPQPLPSLA EASHLPMNVQ SSCLVSPSPP PAGFQIGNNP  480
FSIGQNAAVL LRSQMSKGLQ AGGGAATINQ THPGYGGPAM DHMLLPQSNA LPVGVGQVVA  540
EGDLKTAVMQ SGYFHGSPVP PAAMSAAGSS PCDGWRGSAL SMNPAGRLAG LVPSLGDAHG  600
PARATAALGG AAESQGRNLG FVGKDTGIIP SRFAADDVEP PPPPALNHNR VGGSGDTGRA  660
QEELHLGFME APKVANPGLP HFSPADVMSV LSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22218281164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271366.10.0PREDICTED: two-component response regulator ORR21-like isoform X1
RefseqXP_010271367.10.0PREDICTED: two-component response regulator ORR21-like isoform X1
SwissprotA2XE311e-163ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A1D1XD670.0A0A1D1XD67_9ARAE; Two-component response regulator ARR2 (Fragment)
STRINGXP_010271366.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-119response regulator 2