PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0038200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 211aa    MW: 22684.4 Da    PI: 9.5856
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0038200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-163681148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+++ eEd+l+v++ ++lG++ W++Ia++++  Rt++++k++w+++l
   Spipo2G0038200 36 RGNFSGEEDKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNHWNTHL 81
                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-101741IPR009057Homeodomain-like
SuperFamilySSF466891.88E-221787IPR009057Homeodomain-like
PROSITE profilePS500904.1351730IPR017877Myb-like domain
PROSITE profilePS5129425.4033185IPR017930Myb domain
SMARTSM007173.3E-163583IPR001005SANT/Myb domain
PfamPF002494.4E-153681IPR001005SANT/Myb domain
CDDcd001671.34E-113881No hitNo description
Gene3DG3DSA:1.10.10.601.1E-204286IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MTSFDRLRLS ESDGLLRCSK SCRLRWTNYL RPGIKRGNFS GEEDKLIVHL QALLGNRWAA  60
IASYLPERTD NDIKNHWNTH LKKKLRRTKA GGGGGGGSAG RGQWERRLQE DIHVAERALR  120
EALSPESSAA VSEACNSIVT LGRGQREALA STAGYAYCSA HNISRLLQGW PESKPNSELT  180
HLTTLCDGGG GGGSVSGPTN DVVVTPGSTN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-19178540108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028953285.15e-64myb-related protein 306-like
SwissprotP813929e-58MYB06_ANTMA; Myb-related protein 306
TrEMBLB9H0F84e-62B9H0F8_POPTR; Uncharacterized protein
STRINGXP_008341573.12e-63(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.14e-56myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]