PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo2G0051800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

LBD

Protein Properties

Length: 87aa MW: 9994.43 Da PI: 8.7689

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo2G0051800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	70.2	4.5e-22	18	86	19	87
DUF260 19 apyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 + yfp+e++++f+nv+++FGa+nv ++l++lp+ r da++sl++eAe+++ +Pv+G++g i lq+ql Spipo2G0051800 18 RAYFPQEESARFKNVNRVFGANNVARILNDLPPGSRWDAVTSLCFEAEMQLLEPVKGCFGYIEFLQRQL 86 68****************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.442	1	86	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-20	18	86	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MRGVQTFASE LRSWVRHRAY FPQEESARFK NVNRVFGANN VARILNDLPP GSRWDAVTSL 60 CFEAEMQLLE PVKGCFGYIE FLQRQL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-22	20	86	31	97	LOB family transfactor Ramosa2.1
5ly0_B	2e-22	20	86	31	97	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254539	1e-111	AC254539.1 Spirodela polyrhiza clone GNAS837-M21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022883969.1	9e-22	LOB domain-containing protein 25-like isoform X1
Refseq	XP_022883970.1	9e-22	LOB domain-containing protein 25-like isoform X2
Refseq	XP_022883971.1	9e-22	LOB domain-containing protein 25-like isoform X2
Refseq	XP_022883972.1	9e-22	LOB domain-containing protein 25-like isoform X2
Refseq	XP_022883973.1	9e-22	LOB domain-containing protein 25-like isoform X2
Refseq	XP_022883974.1	9e-22	LOB domain-containing protein 25-like isoform X2
Refseq	XP_022883975.1	9e-22	LOB domain-containing protein 25-like isoform X2
Refseq	XP_022883977.1	9e-22	LOB domain-containing protein 25-like isoform X2
Refseq	XP_022883978.1	9e-22	LOB domain-containing protein 25-like isoform X2
Swissprot	Q8L8Q3	1e-20	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A2I0HZI8	1e-20	A0A2I0HZI8_PUNGR; Uncharacterized protein
STRING	XP_008792635.1	8e-20	(Phoenix dactylifera)
STRING	XP_008792769.1	4e-20	(Phoenix dactylifera)
STRING	XP_010037527.1	7e-20	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	5e-23	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Spipo2G0051800

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]