PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0052100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HB-other
Protein Properties Length: 86aa    MW: 9945.2 Da    PI: 5.0929
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0052100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.85.9e-1128602254
                    SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54
                    +ryps +e++ L++k+gLt +q+++WF N R +
  Spipo2G0052100 28 TRYPSDDEKQMLSSKTGLTRNQISNWFINARVR 60
                    89*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.0E-6768IPR001356Homeobox domain
CDDcd000861.80E-102664No hitNo description
Gene3DG3DSA:1.10.10.601.8E-182770IPR009057Homeodomain-like
SuperFamilySSF466891.41E-132771IPR009057Homeodomain-like
PROSITE profilePS5007110.92964IPR001356Homeobox domain
PfamPF059206.5E-143060IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MVFQLLELSA RTSSHTLAFC RSILPLDTRY PSDDEKQMLS SKTGLTRNQI SNWFINARVR  60
LWKPVIEEMY REEFTEDSDD SKPSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932651.18e-26BEL1-like homeodomain protein 11
RefseqXP_010932659.18e-26BEL1-like homeodomain protein 11
RefseqXP_019705289.18e-26BEL1-like homeodomain protein 11
RefseqXP_019705292.18e-26BEL1-like homeodomain protein 11
RefseqXP_029123254.18e-26BEL1-like homeodomain protein 11
SwissprotQ1PFD17e-21BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A2H3ZSB92e-23A0A2H3ZSB9_PHODC; BEL1-like homeodomain protein 11
TrEMBLM0SV934e-24M0SV93_MUSAM; Uncharacterized protein
TrEMBLV4TF602e-23V4TF60_9ROSI; Uncharacterized protein
STRINGXP_008794021.14e-24(Phoenix dactylifera)
STRINGGSMUA_Achr5P03140_0017e-25(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.13e-23BEL1-like homeodomain 11