PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0052500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 200aa    MW: 22258 Da    PI: 10.4636
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0052500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF343.7e-111960344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i nk  r+ tf  R+  + KK  ELS LCd+++a+ii  ++ 
  Spipo2G0052500 19 IGNKNDRKHTFRMRKSCLVKKVGELSALCDVQAAMIIHRPNE 60
                    789*********************************987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-9968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.923955IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-141078IPR002100Transcription factor, MADS-box
PfamPF003196.6E-121960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MQIAAMATAT KKKTRRRLIG NKNDRKHTFR MRKSCLVKKV GELSALCDVQ AAMIIHRPNE  60
HGIQAWPSKE TVSSLLREVP RHAVARAKEA RDQSGGLPPE VEEEKNRELE LEYLAAWLLG  120
CRGRALKQLT YGELCRLQQM MGAEMAELQA RMDSLPSTGR RPTTACSLRY LRAPLFPAPR  180
PPSPPCCAAA ERDVAVMRG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27960.18e-11AGAMOUS-like 90