PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0052600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25920 Da    PI: 9.9194
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0052600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.65.1e-161151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    ienk+ r  tf kR++ ++KK  ELS+LCd+++a++i s+ 
  Spipo2G0052600 11 IENKTSRRQTFKKRKTCLMKKIGELSILCDVQAAMVIHSPY 51
                    9************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.848149IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-19160IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-10323IPR002100Transcription factor, MADS-box
CDDcd002666.59E-24385No hitNo description
SuperFamilySSF554554.45E-22393IPR002100Transcription factor, MADS-box
PfamPF003192.3E-161152IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MIKKKMKLQL IENKTSRRQT FKKRKTCLMK KIGELSILCD VQAAMVIHSP YDHGIQVWPS  60
KEEASSLLRR FLDAPLYERQ KHGMDQEAFL RQQINVLNSK VEKEEKKNQE LESEYLAAWF  120
LGFRGRTLKQ LTNDELNHLQ LMVEAKLEEV QARMNAILRH QQTPGGFLTY AAVEPGPSTL  180
PHGLTSFYDA VEARIRALRG PEWQREMMAS PSLPSISAFA PSSLVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224KKKMKLQLIENKTSRRQTFKKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.18e-25M-type_MADS family protein