PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0055800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 436aa    MW: 46271.2 Da    PI: 6.9671
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0055800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1482.7e-15242296357
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                     + kr rr+ +NRe+ArrsR+RK+a + eLe  v +L aeN++L k+  e++++  
  Spipo2G0055800 242 DAKRVRRMLSNRESARRSRKRKQAHLSELEAQVSQLRAENSSLLKRFAEINQKFN 296
                     689******************************************9999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.9E-13239296No hitNo description
SMARTSM003387.4E-19240304IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.875242297IPR004827Basic-leucine zipper domain
PfamPF001707.1E-13243294IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.04E-11244294No hitNo description
CDDcd147022.69E-19245296No hitNo description
PROSITE patternPS000360247262IPR004827Basic-leucine zipper domain
PfamPF124987.8E-19311418IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MERAYSVEEI SNHIWPPSSP SSSPHAAGGG KEQKMMNRSP SEWAFQMFLQ EAVPGGASPA  60
AVSNADDHHR VPEAAADNAD AKPSASLGSR RGEDDEVAEI KVAPVAPPKV SQVAGGRLSS  120
IPEDTDQYHE YLKQQLDLAC AAAAVVLSRT SGTKSQESAS FSGPASCLSD GSHVGAQAPN  180
KGSSSKPNEP KGEAHNAIPA LPAMQSTAGQ PRASTSCSSR EISDDDEIDG ETVMMDSMDP  240
ADAKRVRRML SNRESARRSR KRKQAHLSEL EAQVSQLRAE NSSLLKRFAE INQKFNEAAV  300
NNRILKADVE TMRAKVKMAE EAVKRVRGWK AAYPNMPDVA AAVGALFSDN SGERRDAAAP  360
VQDGPKALFV QQQQAQQLPH DQGGIGEATG GGGKTGRPVS VRRVPSLEHL QKMIHNQPAP  420
SGDSDAAKSN QQSHA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256262RRSRKRK
2256263RRSRKRKQ
3258263SRKRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1XJP21e-118A0A1D1XJP2_9ARAE; Light-inducible protein CPRF2 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34883878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-43bZIP family protein