PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo2G0058000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 279aa MW: 30363.6 Da PI: 5.1371

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo2G0058000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.3	2.4e-12	113	157	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+++ +++ Lr+llP++ +K +K++i+ A+ Y++s+ Spipo2G0058000 113 HMISERRRREKMSKSYTDLRSLLPSP-----TKSNKISIVIAAISYLRSM 157 7899********************.....9*************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-14	106	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.018	108	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-12	112	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.97E-12	112	162	No hit	No description
Pfam	PF00010	1.4E-9	113	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.0E-10	114	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDPGPSSLPW EEGEETVEPL FWSFGDELSS FSCGFTALVE LPPLPPSLLL PPPLPLPPPA 60 PETSFEGYQR EEREVPGYSG GCSMVQGTVE LPGKNDAGGD PAERGEGNRG IRHMISERRR 120 REKMSKSYTD LRSLLPSPTK SNKISIVIAA ISYLRSMRGQ LEALRRRNRV LSRRILGEAG 180 SGAVRLETIK LPIAAATASL ATNSLMEALR RLKAMGARPR SIRWSWTGEG LVAGADAKPT 240 KTAEETATVV ASILVQEEDE ELDDSLRLCE PIEGTWRV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	120	RGIRHMISERRRR
2	116	121	ERRRRE
3	117	122	RRRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50

Link Out ? help Back to Top
Phytozome	Spipo2G0058000