PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0079000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SAP
Protein Properties Length: 398aa    MW: 43424.2 Da    PI: 8.0778
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0079000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP421.39.4e-1291039572453
             SAP  72 alanvfqvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaG 166
                     al    +vcs+wra+s+s+llwq ltrr+W+r ++   tWr ey + hrt rnfr r+  + t  +dp+          l Cr+l+lsd++laaG
  Spipo2G0079000  10 ALQPTSKVCSSWRAISQSELLWQSLTRRVWSRDRRRLPTWRAEYAHCHRTGRNFRLRNCVHSTVFVDPT----------LACRRLSLSDRHLAAG 94 
                     7777889****************************99************************99988885..........99************** PP

             SAP 167 fadGavrlfdletrlhvstflpqh.rdrlGrfsravsGivisd.srlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvG 259
                     f dG+vrlfdl+t   v t+lp+  rd lG fs+++sG+++ + srlv+a+ dGdihva     ++ aarr+ +G+ v+dG+lvdfaG++rWwvG
  Spipo2G0079000  95 FLDGSVRLFDLSTADLVATYLPHPgRDILGSFSQSISGVLLDRaSRLVYASQDGDIHVASTLNGAVHAARRVRVGNAVEDGTLVDFAGCDRWWVG 189
                     **********************853899*************86379*************88777999**************************** PP

             SAP 260 lyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasn 354
                     l+aGvpGr++h+Wd++teel fvGGsltdP+av GWhm+t+    vGrvr ++ +t+v Ct++rl v+ l +++ vl+e+ +rrG  v ++da +
  Spipo2G0079000 190 LFAGVPGRSLHVWDGDTEELAFVGGSLTDPDAVIGWHMFTDSEGPVGRVRFSDPATIVGCTASRLQVLGLDDPEAVLAEHGFRRGAAVEAVDACD 284
                     *********************************************************************************************** PP

             SAP 355 eayvvvdsrGvatvrrvenleevcrfr.vrg..........aqrgvlgCvnggyalvyagg.vlrvWeiekkegylyslrervg.evnalvaddr 436
                       ++vv+ +G+a+vr + +leevcrf+ vr+          + ++++gC+n gya+v+++   +r+W+  + e yly++rer+   + ++ addr
  Spipo2G0079000 285 GRVMVVNGQGMAKVRAARTLEEVCRFNtVRRrpasvqqqapVGGRLVGCMNWGYAVVCGPDgGVRLWDALTGE-YLYTFRERIAgGAGTVAADDR 378
                     **************************73443444322122233689************97449*****99866.********9857888999*** PP

             SAP 437 hvavsssdgtihlldfg 453
                      vav   ++ +hl+dfg
  Spipo2G0079000 379 RVAVWCGETGLHLWDFG 395
                     ****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.504.3E-61469No hitNo description
SuperFamilySSF813834.14E-71558IPR001810F-box domain
Gene3DG3DSA:2.130.10.103.6E-775163IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509984.32E-1688394IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
Gene3DG3DSA:2.130.10.109.3E-7196394IPR015943WD40/YVTN repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MRHLGLVNTA LQPTSKVCSS WRAISQSELL WQSLTRRVWS RDRRRLPTWR AEYAHCHRTG  60
RNFRLRNCVH STVFVDPTLA CRRLSLSDRH LAAGFLDGSV RLFDLSTADL VATYLPHPGR  120
DILGSFSQSI SGVLLDRASR LVYASQDGDI HVASTLNGAV HAARRVRVGN AVEDGTLVDF  180
AGCDRWWVGL FAGVPGRSLH VWDGDTEELA FVGGSLTDPD AVIGWHMFTD SEGPVGRVRF  240
SDPATIVGCT ASRLQVLGLD DPEAVLAEHG FRRGAAVEAV DACDGRVMVV NGQGMAKVRA  300
ARTLEEVCRF NTVRRRPASV QQQAPVGGRL VGCMNWGYAV VCGPDGGVRL WDALTGEYLY  360
TFRERIAGGA GTVAADDRRV AVWCGETGLH LWDFGQL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029117302.11e-149transcriptional regulator STERILE APETALA
TrEMBLA0A2H3X4T71e-138A0A2H3X4T7_PHODC; transcriptional regulator STERILE APETALA
STRINGXP_008778313.11e-139(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1848179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-100SAP family protein