PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo2G0079100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

SAP

Protein Properties

Length: 86aa MW: 9074.57 Da PI: 10.4051

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo2G0079100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	59.7	4.5e-19	8	59	29	80
SAP 29 segpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvc 80 +++psssr+r+ ++vwpePf+eala+qvaida ++ Grl+ a+a++ vfqv+ Spipo2G0079100 8 TGEPSSSRRRSGDGVWPEPFVEALAVQVAIDAGKTGGRLSVAPAVVAVFQVS 59 5789**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MSLADPRTGE PSSSRRRSGD GVWPEPFVEA LAVQVAIDAG KTGGRLSVAP AVVAVFQVSL 60 LRGLDCRLPF PLPSVILIRS RSIYL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270208.1	2e-16	PREDICTED: transcriptional regulator STERILE APETALA
TrEMBL	A0A438IFN3	2e-15	A0A438IFN3_VITVI; Transcriptional regulator STERILE APETALA
TrEMBL	F6HHP0	1e-15	F6HHP0_VITVI; Uncharacterized protein
STRING	VIT_12s0057g00910.t01	2e-16	(Vitis vinifera)
STRING	XP_010270208.1	6e-16	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	2e-07	SAP family protein

Link Out ? help Back to Top
Phytozome	Spipo2G0079100