PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0082100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 112aa    MW: 13135.2 Da    PI: 10.576
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0082100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.65.8e-32959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+iifs++gklyeys+
  Spipo2G0082100  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIIFSTKGKLYEYST 59
                    79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.646161IPR002100Transcription factor, MADS-box
CDDcd002654.11E-40274No hitNo description
SuperFamilySSF554553.27E-34287IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-323859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVALIIFST KGKLYEYSTD  60
SSMERILQRY ERYSCTQRDL AAADPELQEV TIPFLRTRSR YRFFIKKHYQ A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-22174173Myocyte-specific enhancer factor 2B
1tqe_Q2e-22174173Myocyte-specific enhancer factor 2B
1tqe_R2e-22174173Myocyte-specific enhancer factor 2B
1tqe_S2e-22174173Myocyte-specific enhancer factor 2B
6byy_A2e-22174173MEF2 CHIMERA
6byy_B2e-22174173MEF2 CHIMERA
6byy_C2e-22174173MEF2 CHIMERA
6byy_D2e-22174173MEF2 CHIMERA
6bz1_A2e-22174173MEF2 CHIMERA
6bz1_B2e-22174173MEF2 CHIMERA
6bz1_C2e-22174173MEF2 CHIMERA
6bz1_D2e-22174173MEF2 CHIMERA
6c9l_A2e-22174173Myocyte-specific enhancer factor 2B
6c9l_B2e-22174173Myocyte-specific enhancer factor 2B
6c9l_C2e-22174173Myocyte-specific enhancer factor 2B
6c9l_D2e-22174173Myocyte-specific enhancer factor 2B
6c9l_E2e-22174173Myocyte-specific enhancer factor 2B
6c9l_F2e-22174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020091886.11e-48MADS-box transcription factor 14 isoform X1
RefseqXP_020091887.18e-49MADS-box transcription factor 14 isoform X2
SwissprotD7SMN65e-48FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A199VUK67e-48A0A199VUK6_ANACO; MADS-box transcription factor 14
TrEMBLA0A199VW002e-47A0A199VW00_ANACO; MADS-box transcription factor 14
STRINGXP_010257957.14e-47(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.19e-46MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]