PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0099200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GRAS
Protein Properties Length: 540aa    MW: 59129.1 Da    PI: 4.655
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0099200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS342.47.5e-1051475383374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshl 96 
                     e+LlecA+avs gd++++q+l++ l+el+sp+gd++q+laayf++AL ar+++s++++ ++l++  +++ +  +++  + l f+evsP+ +f+h+
  Spipo2G0099200 147 EVLLECARAVSGGDTARVQQLMWMLNELSSPYGDANQKLAAYFLQALLARMTSSGPRTLRTLAAAYERNCS-FDSTRKTALrFQEVSPWSTFGHV 240
                     78************************************************************998887544.4444444445************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg................skeeleetgerLakfAeelgvp 175
                     + N aIlea++ge+rvHi+Df+ + ++QWp+Ll+aLa+R++++p+lR+T+v     g                 ++ ++e+g r++kfA+ +gvp
  Spipo2G0099200 241 ASNGAILEAFDGESRVHILDFSNTFCTQWPTLLEALATRSDDTPHLRLTTVITTP-GgagdgggvesssstssVQRVMKEIGARMEKFARLMGVP 334
                     *************************************************998844.3478999999999998888999***************** PP

            GRAS 176 fefnvlvak.rledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyy 264
                     f+f++++++ +l++l++++L      +E+la+n++ +lh +   s+sl   rd+v  ++++l+Pk++++ve+ead    +++++++ f e+l+++
  Spipo2G0099200 335 FKFQAIHHTgDLSALDFDSLGAPAdgDEVLAINCINALHGVG--SGSL---RDSVAAALRRLRPKIMTIVEEEADIrpdDDGDYVRAFGETLRFF 424
                     ******8878**********998888***************8..5554...56*********************98766678************* PP

            GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..... 354
                     sa fdsl++++p++s+er ++Er+  g+ iv++vac  +e++er+et+++W++r+++aGF+pv+ls+++a+++++llr++  +g+++  +     
  Spipo2G0099200 425 SAYFDSLDESFPKTSNERLSLERA-AGKGIVDLVACGAEESTERRETAASWSARMRAAGFSPVSLSDDVADDVRALLRRYR-EGWSMAASseadp 517
                     ************************.********************************************************.7776663333556 PP

            GRAS 355 .sgslvlgWkdrpLvsvSaWr 374
                       + ++l+Wk++p+v++SaW+
  Spipo2G0099200 518 sAAGVFLTWKEQPVVWASAWK 538
                     466777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.611119513IPR005202Transcription factor GRAS
PfamPF035142.6E-102147538IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MDTLFRLVSF QPDQQSFNSS RTSSSSRSSK QANHHLYHSQ YTTEEEDEEC CIHNDANNNS  60
DNVYMDEDDF SSSSSSKQYY YPYAQQHQPP ASATTTITAA TPTTSYNTPP TSQPQHQTFE  120
PAEFSYPQGF NLDADVDFTS SGKWASEVLL ECARAVSGGD TARVQQLMWM LNELSSPYGD  180
ANQKLAAYFL QALLARMTSS GPRTLRTLAA AYERNCSFDS TRKTALRFQE VSPWSTFGHV  240
ASNGAILEAF DGESRVHILD FSNTFCTQWP TLLEALATRS DDTPHLRLTT VITTPGGAGD  300
GGGVESSSST SSVQRVMKEI GARMEKFARL MGVPFKFQAI HHTGDLSALD FDSLGAPADG  360
DEVLAINCIN ALHGVGSGSL RDSVAAALRR LRPKIMTIVE EEADIRPDDD GDYVRAFGET  420
LRFFSAYFDS LDESFPKTSN ERLSLERAAG KGIVDLVACG AEESTERRET AASWSARMRA  480
AGFSPVSLSD DVADDVRALL RRYREGWSMA ASSEADPSAA GVFLTWKEQP VVWASAWKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B0.01105392420Protein SHORT-ROOT
5b3h_E0.01105392420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272682.10.0PREDICTED: protein SHORT-ROOT-like
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A1D1Z6P80.0A0A1D1Z6P8_9ARAE; Protein SHORT-ROOT 1 (Fragment)
STRINGXP_010272682.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-177GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]