PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0100900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GRAS
Protein Properties Length: 551aa    MW: 59740.6 Da    PI: 5.3335
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0100900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS263.38.6e-811715494374
            GRAS   4 lLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +L+++A+av+s+d+++a+a+Larl++    a+  g+p+qR+a yf eAL++ l+++ +++ ++l +      +++++++a+k+fs++sP+l f+ 
  Spipo2G0100900 171 QLIRAAQAVESNDASNARAILARLNQPlsaAAAGGRPVQRVACYFREALQSLLSHEHHTVGETLVSPV----EMVHKITAYKAFSDLSPVLHFAS 261
                     79************************8663444559******************97766666654433....489******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +taNq++lea+++++ +H iDfd++ G+QW +++++ a+R       pps+RiT+v++   +++ e++  +e+L++fA+ lg++f+ +++ + ++
  Spipo2G0100900 262 FTANQTVLEAMDRSRSIHLIDFDVGLGGQWSSFMHEVAERCraaaTVPPSIRITAVVR---EESLETRLSAENLRDFARGLGLEFSTEFVRVASM 353
                     **************************************9995555559**********...46899999********************999999 PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.............sFlerflealeyysalf 268
                         l +Lr++ g+a+aV+l  + +rl+ ++ +++    ++L+++ ++sP+vvv+v+ e+++ s+             sF + f+  le  sa++
  Spipo2G0100900 354 GFSALGALRLSAGDAVAVSLTPASFRLFGNTPETAA---QLLRFISRVSPRVVVFVDTESSCRSSssafsglppasqqSFRRCFAAGLENSSAFL 445
                     9999************************66666666...********************999555589********************9999988 PP

            GRAS 269 dsleak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                     + l++    ++  +++   +Er+l+++++   +a + +           Wre++e+aG+kp+p+s ++++qa+ll r+ ++ g++ve ++ s+vl
  Spipo2G0100900 446 EYLDSAaaaVGLGDDQVCRIERFLVKPQVLASLALSLNF-----GGTPPWREMFEAAGMKPIPFSAFTESQAELLTRRSPVAGFQVERRDWSMVL 535
                     7775441116667799999***************99886.....899************************************************ PP

            GRAS 361 gWkdrpLvsvSaWr 374
                      W+++ L s+SaWr
  Spipo2G0100900 536 SWRGKDLASTSAWR 549
                     *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.053142529IPR005202Transcription factor GRAS
PfamPF035143.0E-78171549IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MKSSRVGSPQ FAPISKLQQF PLHGDRQESD VFEDSGFVLP FYEPTSVLDP HLSSSPTASD  60
NLLHDIPSLP PSCWDDPPLP SYSEDWDLVT WFLGGSGGEK DEPTPPPSFK PLHQFLDNQT  120
SSSPLPPLPL YEAFSPVASE LNKMPCFDPA APVPLVPPPS SSATFNGYLV QLIRAAQAVE  180
SNDASNARAI LARLNQPLSA AAAGGRPVQR VACYFREALQ SLLSHEHHTV GETLVSPVEM  240
VHKITAYKAF SDLSPVLHFA SFTANQTVLE AMDRSRSIHL IDFDVGLGGQ WSSFMHEVAE  300
RCRAAATVPP SIRITAVVRE ESLETRLSAE NLRDFARGLG LEFSTEFVRV ASMGFSALGA  360
LRLSAGDAVA VSLTPASFRL FGNTPETAAQ LLRFISRVSP RVVVFVDTES SCRSSSSAFS  420
GLPPASQQSF RRCFAAGLEN SSAFLEYLDS AAAAVGLGDD QVCRIERFLV KPQVLASLAL  480
SLNFGGTPPW REMFEAAGMK PIPFSAFTES QAELLTRRSP VAGFQVERRD WSMVLSWRGK  540
DLASTSAWRC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2617454825378Protein SCARECROW
5b3h_A1e-2617454824377Protein SCARECROW
5b3h_D1e-2617454824377Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1Y0H80.0A0A1D1Y0H8_9ARAE; Scarecrow-like protein 15
STRINGXP_008795618.11e-113(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17202711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.15e-70GRAS family protein