PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo2G0101500

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

C2H2

Protein Properties

Length: 204aa MW: 23085.7 Da PI: 10.2178

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo2G0101500	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.4e-06	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Spipo2G0101500 67 FVCEICNKGFQRDQNLQLHRRGH 89 89*******************88 PP
2	zf-C2H2	14.3	0.00012	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C k + +s+ k H + + Spipo2G0101500 143 YKCEKCLKKYAVQSDWKAHTKIC 165 9******************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.1E-6	66	89	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.1E-8	66	89	No hit	No description
SMART	SM00355	0.017	67	89	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	2.5E-5	67	89	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	67	89	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2
SMART	SM00355	89	108	138	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.7E-5	131	164	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.1E-8	138	163	No hit	No description
SMART	SM00355	140	143	163	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MPTEIENTSA MTASNSASGE ASISSTGQQP PPPPPPAKRK RNLPGMPDPD AEVIALSPKT 60 LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSG KEVRKRVYVC PEPTCVHHDP 120 ARALGDLTGI KKHFSRKHGE KKYKCEKCLK KYAVQSDWKA HTKICGTREY RCDCGTLFSR 180 YRSYFLPFRC ILPQNCGFRL LVT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-21	139	185	3	49	Zinc finger protein JACKDAW
5b3h_F	3e-21	139	185	3	49	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ328601	1e-41	DQ328601.1 Lolium multiflorum putative zinc finger protein ID1 (ID1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020242793.1	1e-116	LOW QUALITY PROTEIN: protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-105	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A4D6LRJ9	1e-110	A0A4D6LRJ9_VIGUN; Regulatory protein SWI5
TrEMBL	K9P0T0	1e-108	K9P0T0_9ROSI; Zinc finger protein
STRING	XP_008338682.1	1e-108	(Malus domestica)
STRING	EMJ05524	1e-109	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	8e-88	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Spipo2G0101500

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]