PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo2G0111700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

GRF

Protein Properties

Length: 560aa MW: 59845.7 Da PI: 8.6592

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo2G0111700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.3	3e-24	215	258	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Spipo2G0111700 215 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVE 258 79***************************************998 PP
2	QLQ	57.9	3e-20	145	181	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+PvP+ Ll+ai+k Spipo2G0111700 145 GPFTPSQWMELEHQALIYKYIDANVPVPSSLLVAIRK 181 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.5E-12	145	181	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.42	146	181	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.1E-15	146	180	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	215	259	IPR014977	WRC domain
Pfam	PF08879	6.5E-21	216	258	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008285	Biological Process	negative regulation of cell proliferation
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence Send to blast
MDFGTVMGID GLVSSSSEIG VGGSCGVFSS SLVSSDIDSI RQKGLYRSGF LKHARPGESE 60 ENDWMRLKAP RSEVAMMAPT KSPPSLISPN SHSLFPEGQQ MLSFSSPKPD SLMLCNDGGL 120 TYYHPSGSSF SVPTSSYARN AGVRGPFTPS QWMELEHQAL IYKYIDANVP VPSSLLVAIR 180 KSLGSSVFPS YSPGSLRATE LGWSPFHLGF SGNADPEPGR CRRTDGKKWR CSRDAVADQK 240 YCERHMNRGR HRSRKPVEGH SGHAAKAMPI ISPTGSVSTG GSSNNSLSIA HQQIKSLQQP 300 NPTTASPFAR ISMNKENVNG DELGRSQSLL MTTAASAHQK PKDGNLFPLP RQRNPFEDER 360 AAPQPNPLRH FFDDWPKGQS NRSVISWPEV EEIQSDRTQL SISIPMASSE FSSSSSSPAR 420 ERAAALSSKI SREADPTHMG LGVGQREASW IPISWESSMG GPLGEVLNKT SNPNCGGHSK 480 NPSPSSLNLM TEAWDNTSPG VGSSPTGVLQ KSTAFASLSG STGSSPRADA NRVAHDSTGS 540 LCDNLLGSTL VNSTSIPTL*

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence Send to blast

MDFGTVMGID GLVSSSSEIG VGGSCGVFSS SLVSSDIDSI RQKGLYRSGF LKHARPGESE  60
ENDWMRLKAP RSEVAMMAPT KSPPSLISPN SHSLFPEGQQ MLSFSSPKPD SLMLCNDGGL  120
TYYHPSGSSF SVPTSSYARN AGVRGPFTPS QWMELEHQAL IYKYIDANVP VPSSLLVAIR  180
KSLGSSVFPS YSPGSLRATE LGWSPFHLGF SGNADPEPGR CRRTDGKKWR CSRDAVADQK  240
YCERHMNRGR HRSRKPVEGH SGHAAKAMPI ISPTGSVSTG GSSNNSLSIA HQQIKSLQQP  300
NPTTASPFAR ISMNKENVNG DELGRSQSLL MTTAASAHQK PKDGNLFPLP RQRNPFEDER  360
AAPQPNPLRH FFDDWPKGQS NRSVISWPEV EEIQSDRTQL SISIPMASSE FSSSSSSPAR  420
ERAAALSSKI SREADPTHMG LGVGQREASW IPISWESSMG GPLGEVLNKT SNPNCGGHSK  480
NPSPSSLNLM TEAWDNTSPG VGSSPTGVLQ KSTAFASLSG STGSSPRADA NRVAHDSTGS  540
LCDNLLGSTL VNSTSIPTL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008790288.1	0.0	growth-regulating factor 6-like
Swissprot	Q6AWY3	1e-99	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A1D1YSK5	0.0	A0A1D1YSK5_9ARAE; Repressor of RNA polymerase III transcription MAF1
STRING	XP_008790288.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	6e-70	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Spipo2G0111700

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]