PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo2G0112100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bZIP

Protein Properties

Length: 157aa MW: 17199.5 Da PI: 11.6361

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo2G0112100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.1	4.6e-14	37	95	4	62
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +r rr+++NRe+ArrsR+RK+ +e L++ + L +eN++L+ +l ++ +l+ + Spipo2G0112100 37 ERRRRRMISNRESARRSRARKQRLMEGLRTQTDWLISENRELAGRLAAVADHRLALRRD 95 6899***************************************9999999988888766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.6E-10	34	86	No hit	No description
SMART	SM00338	9.9E-12	34	98	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.151	36	99	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-10	36	95	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.73E-11	38	88	No hit	No description
PROSITE pattern	PS00036	0	41	56	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MPSPETVAAA HPPTPDGGSG FGPPEEDPER AASPAEERRR RRMISNRESA RRSRARKQRL 60 MEGLRTQTDW LISENRELAG RLAAVADHRL ALRRDNDRLL SEAAALRRRL SDVRRLLVFR 120 QLQRLAAAAP ACGGDPQSLV PAAFAGGFMP ETELTA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	57	RRSRARKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009362602.1	4e-31	PREDICTED: bZIP transcription factor 11
TrEMBL	A0A1D1XF28	3e-31	A0A1D1XF28_9ARAE; Ocs element-binding factor 1 (Fragment)
STRING	XP_009362602.1	1e-30	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17765	5	10

Link Out ? help Back to Top
Phytozome	Spipo2G0112100