PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0118800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 188aa    MW: 20478.2 Da    PI: 11.0946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0118800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.7e-213888155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s ykG r+++ +grW+AeIrdp++    kr++lg+++t eeAa+a++aa++k++g
  Spipo2G0118800 38 SIYKGLRRRP-WGRWAAEIRDPRK---GKRIWLGTYDTQEEAAAAYDAAARKIRG 88
                    57********.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.34E-213895No hitNo description
SuperFamilySSF541712.81E-233896IPR016177DNA-binding domain
PfamPF008475.2E-153888IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-303995IPR001471AP2/ERF domain
SMARTSM003801.3E-3339102IPR001471AP2/ERF domain
PROSITE profilePS5103223.673996IPR001471AP2/ERF domain
PRINTSPR003676.4E-104051IPR001471AP2/ERF domain
PRINTSPR003676.4E-106278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MAIASTSSPA ASLDVHEKNS GEVKLGGGEG RKKRKKKSIY KGLRRRPWGR WAAEIRDPRK  60
GKRIWLGTYD TQEEAAAAYD AAARKIRGSK AKLNFIYGGA GETPATPTKR SPQAAAQNFL  120
EMDTTREGRE IRGGNGDGPL PGLWDPMEIL SLTFDSWSRP SSLFDRRLPG SARARKSFSS  180
LKISIAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1940951571Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036RKKRKKK
23045RKKRKKKSIYKGLRRR
33135KKRKK
43246KRKKKSIYKGLRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.16e-15ERF domain protein 10