PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo2G0122400

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

MYB_related

Protein Properties

Length: 442aa MW: 49008.6 Da PI: 8.3059

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo2G0122400	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.2	1.2e-15	391	439	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +rWT+ E+++l +avk++G g+Wk+I+ + +gRt+ ++k++w+++ Spipo2G0122400 391 KRWTPREEDILREAVKKHGAGNWKLISLYYSgalEGRTEVDLKDKWRNL 439 69*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.169	382	441	IPR017930	Myb domain
SuperFamily	SSF46689	2.44E-15	387	440	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-9	389	441	IPR001005	SANT/Myb domain
CDD	cd11660	7.72E-17	391	441	No hit	No description
Pfam	PF00249	2.6E-13	391	439	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-14	391	440	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MDSRKASWIL EFVLRQPIDD WLAKVVLLGL PIPRVLDPRL KKILLLRRLQ SDLSVGGISG 60 ETLRSLELLE ELDRSLGAAE TSGALMAAYS AVAAELTAAP LRSGRQANFF ECVNRIWNCR 120 VADLEQSEAR GMMGEGLRQW RKRMEEAVVS DDAKEWVLQR DTSGEAVASL REYLRVALEE 180 IGPPLLELAA TLLDDKPGTS GQRDKEVLVP GKTDRPNQDA ASDGLLLSPM PEINKLKEAL 240 KSSCADLRKA LQDFSPRKAA EVQNAMLENP PDPVDENNSS SRTDEAKDAD DRRPDAAVCA 300 AMQRSAHPGA ATNGGADSRS RWRIKVVGVI EPANDVISSS SAQWDEDSIE SFSDGSPNSA 360 KRRHLPPPGN RRVSPLKLQE IKKFVRRRKV KRWTPREEDI LREAVKKHGA GNWKLISLYY 420 SGALEGRTEV DLKDKWRNLT R*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MDSRKASWIL EFVLRQPIDD WLAKVVLLGL PIPRVLDPRL KKILLLRRLQ SDLSVGGISG  60
ETLRSLELLE ELDRSLGAAE TSGALMAAYS AVAAELTAAP LRSGRQANFF ECVNRIWNCR  120
VADLEQSEAR GMMGEGLRQW RKRMEEAVVS DDAKEWVLQR DTSGEAVASL REYLRVALEE  180
IGPPLLELAA TLLDDKPGTS GQRDKEVLVP GKTDRPNQDA ASDGLLLSPM PEINKLKEAL  240
KSSCADLRKA LQDFSPRKAA EVQNAMLENP PDPVDENNSS SRTDEAKDAD DRRPDAAVCA  300
AMQRSAHPGA ATNGGADSRS RWRIKVVGVI EPANDVISSS SAQWDEDSIE SFSDGSPNSA  360
KRRHLPPPGN RRVSPLKLQE IKKFVRRRKV KRWTPREEDI LREAVKKHGA GNWKLISLYY  420
SGALEGRTEV DLKDKWRNLT R*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	382	388	KFVRRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1D1Y1M0	1e-122	A0A1D1Y1M0_9ARAE; Telomeric repeat-binding factor 1 (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16050	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	6e-11	TRF-like 5

Link Out ? help Back to Top
Phytozome	Spipo2G0122400