PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo32G0007700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bZIP

Protein Properties

Length: 181aa MW: 19603.2 Da PI: 4.9262

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo32G0007700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	54	3.7e-17	107	160	4	57
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r++r++kNRe+A rsR+RK+a++ +Le+++k L+++N +Lk++l lkk+ + Spipo32G0007700 107 ARRAKRMIKNRESAARSRARKQAYTSQLEDEIKRLKEKNLELKENLLLLKKLDE 160 68************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-7	104	160	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.726	106	157	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.4E-14	106	158	No hit	No description
Pfam	PF00170	2.0E-14	107	160	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.32E-11	108	157	No hit	No description
CDD	cd14707	5.79E-18	108	140	No hit	No description
PROSITE pattern	PS00036	0	111	126	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MAPQPAAPPG EDPPPWAAPP EFFPFDGDRG GGSFPAPMEM KPEGVFVDEA AFGPTGFSLP 60 EHLPLLQGPL LGDLQDGFFR REAPPMAAWG LFPPPPPGEA SGGSGSARRA KRMIKNRESA 120 ARSRARKQAY TSQLEDEIKR LKEKNLELKE NLLLLKKLDE DLAPPPPPEN QPQRSSSVEF 180 *

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006654569.1	9e-18	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	8e-15	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0D9WHZ2	1e-16	A0A0D9WHZ2_9ORYZ; Uncharacterized protein
STRING	LPERR05G16840.1	2e-17	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP29147	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17770.2	3e-08	basic region/leucine zipper motif 27

Link Out ? help Back to Top
Phytozome	Spipo32G0007700

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]