PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo3G0014300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Dof

Protein Properties

Length: 497aa MW: 53918.2 Da PI: 6.7335

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo3G0014300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.6e-39	109	169	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s +tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Spipo3G0014300 109 PDKLLPCPRCNSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHSA 169 78999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-30	106	166	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.8E-32	111	167	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	113	167	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	115	151	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MSEARDPAIK LFGRTIPLPE SRSVENSDRS TMDEAGEEVK DSRPDPPTLE RLQGTEPVEL 60 DASSISCSAD ENSDCQSTKQ GDKAASDPKT KQLKNEPDGS NQQKVLKKPD KLLPCPRCNS 120 LDTKFCYYNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA GRRKNKHSAS QCRHLLMPSE 180 AAPSPQADHP DSAHNQPLAG SLMGSRTVLK FGADAPLCES IASVLHLGDQ KRNPRMGPPQ 240 CDENGEEPPS SATSLVASGA VENKFPDNSD QMEQGGVQSC SNEPTPLPHL ECFPGQPWPY 300 PWAPGWTGFA LPAGQHPSKP SQEHDNSNGN PASWNSHMMM ASPAFCGPAI RLPLVPASFW 360 GYAPNWPHET SWSTPWIGSG GVLPSPSSSS GGCSGVVSPT LGKHCRDSSL LVEEKTKSLW 420 IPKTLRIDDP DEAAKSSIWA TLGIKPDPDE SMKKSGIFKG FQPSKIEGRD LHLERKQVLH 480 LNPAALSRSQ TFQEST*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MSEARDPAIK LFGRTIPLPE SRSVENSDRS TMDEAGEEVK DSRPDPPTLE RLQGTEPVEL  60
DASSISCSAD ENSDCQSTKQ GDKAASDPKT KQLKNEPDGS NQQKVLKKPD KLLPCPRCNS  120
LDTKFCYYNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA GRRKNKHSAS QCRHLLMPSE  180
AAPSPQADHP DSAHNQPLAG SLMGSRTVLK FGADAPLCES IASVLHLGDQ KRNPRMGPPQ  240
CDENGEEPPS SATSLVASGA VENKFPDNSD QMEQGGVQSC SNEPTPLPHL ECFPGQPWPY  300
PWAPGWTGFA LPAGQHPSKP SQEHDNSNGN PASWNSHMMM ASPAFCGPAI RLPLVPASFW  360
GYAPNWPHET SWSTPWIGSG GVLPSPSSSS GGCSGVVSPT LGKHCRDSSL LVEEKTKSLW  420
IPKTLRIDDP DEAAKSSIWA TLGIKPDPDE SMKKSGIFKG FQPSKIEGRD LHLERKQVLH  480
LNPAALSRSQ TFQEST*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ924921	4e-31	GQ924921.1 Eleusine coracana cultivar VL315 Dof-type zinc finger protein gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008792513.1	1e-164	cyclic dof factor 2-like
TrEMBL	A0A3S4NDQ2	1e-167	A0A3S4NDQ2_9MAGN; Zinc finger protein
STRING	XP_008792513.1	1e-163	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-74	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Spipo3G0014300