PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0021500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 465aa    MW: 50891.9 Da    PI: 9.3078
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0021500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.2e-10179216542
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                     k  rr+++NReAAr+sR+RKka++++Le    +L +  
  Spipo3G0021500 179 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLNQLE 216
                     788*************************8655554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-7171221No hitNo description
SMARTSM003381.3E-8175238IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.37177221IPR004827Basic-leucine zipper domain
CDDcd147081.28E-21179229No hitNo description
PfamPF001701.6E-6179218IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-6179221No hitNo description
PROSITE patternPS000360182197IPR004827Basic-leucine zipper domain
PfamPF141441.2E-32262336IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MGSRKAGVGV QDDREVASRM SSLVPPLAVS QATGTEGKNM TPSPVPDFGA RERSLGFGLQ  60
HPGNLSRDIF NLKFSGQTVA SNSLRYDALG KPLSSPDATP SDNRSGSLPS SQQKVAQNFP  120
SLPSGHFENW GDSAVAAETS PRTDTSTDVD TDEKSQGKNA MVAVSDSSDR SKEKPGDQKT  180
LRRLAQNREA ARKSRLRKKA YVQQLESSRL KLNQLEQELQ RARQQGIFIS SSGDQSHSSN  240
GNGALTFDVE YARWLEEHNR QIGELRTAVN AHASDNDLRS ILDNVMAHYD DIFRLKSIAA  300
KADVFHILSG MWKTPAERCF LWLGGFRSSE LLKLLVSHLE PLTEQQMAGI CNLQQSSLQA  360
EDALSQGMEA LQQSLSETLA SGSLGTAGSS GNVANYMGQM AMAMGKLGTL ENFLRQADNL  420
RQQTLQQMHR TLTIRQSARA HLAINDYFSR LRALSSLWLA RPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245498.10.0PREDICTED: transcription factor TGA2.2-like isoform X2
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A1D1XPU80.0A0A1D1XPU8_9ARAE; Transcription factor HBP-1b(C1)
STRINGXP_008786823.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-136TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]