PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0030500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 223aa    MW: 24263.1 Da    PI: 6.7232
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0030500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-1985133355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp++     r++lg++ t+e+Aa+a++ a+++++g
  Spipo3G0030500  85 YRGIRRRR-WGKWAAEIRDPRK---GVRVWLGTYNTPEDAARAYDVAAREIRG 133
                     9****777.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-3284142IPR001471AP2/ERF domain
SMARTSM003808.7E-3784147IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-2384142IPR016177DNA-binding domain
PROSITE profilePS5103224.71184141IPR001471AP2/ERF domain
CDDcd000185.70E-2985142No hitNo description
PfamPF008471.7E-1285133IPR001471AP2/ERF domain
PRINTSPR003672.6E-108596IPR001471AP2/ERF domain
PRINTSPR003672.6E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MCGGAIISDF IRFKEDARRG GRKVVPLDLT FDFDGISDYS ESFSSSAVGD GADGPRGSTQ  60
NPKEVSDPEA GNGKEAGGKP RKTMYRGIRR RRWGKWAAEI RDPRKGVRVW LGTYNTPEDA  120
ARAYDVAARE IRGKKAKLNF PDPKPGVSAE RRSAPCPPSP DFSSSSSAWP TPRPAPSEAE  180
LKKQISNLEL LLGLQQEESD AWMGGGCGPY DLEIFDDVEL II*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-19851421573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2H3XWR04e-45A0A2H3XWR0_PHODC; ethylene-responsive transcription factor ERF071-like
TrEMBLQ56E956e-45Q56E95_GOSHI; Putative ethylene responsive element binding protein 2
STRINGXP_008789907.17e-46(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-37ethylene-responsive element binding protein