PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo3G0049300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

HRT-like

Protein Properties

Length: 373aa MW: 41652.6 Da PI: 10.5166

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo3G0049300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	48.6	1.4e-15	292	322	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvi edGsvC+r+Pv gRKRC eH G+Ri Spipo3G0049300 292 VCGVIKEDGSVCERSPVSGRKRCGEHRGRRI 322 7*****************************7 PP
2	HRT-like	46.1	8.3e-15	342	371	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv+ edGs+C ++P gR RC+ HKG+R+ Spipo3G0049300 342 CGVAVEDGSICANPPPLGRRRCHLHKGRRV 371 *****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MGVAWRLGEG KDGKATKVSR VREEAVPVAN GCRLKREDCR RTKHDCAFSK WEILIGPSDW 60 ENYSLGKDGA ERYRTHNLPS SCSCPGIYEL GIARLSASSR RFDPKEIVVV YLGQAENVRT 120 RLQHYGRTGS HLEHGDSTVL QSKGISKAVQ RRPGFFKETF SKGFSIMFRW APMRSKREAL 180 DAEARLLEVF DYAWNRIGNA AYRYEDIIWK LDKLSRASLL HDFLTKLKPW NWKFPGRKQS 240 GIGITTSNGS LKSGDCPNDS KPNQVSAILE LDKSQRVSVQ RKNHPSVGCG GVCGVIKEDG 300 SVCERSPVSG RKRCGEHRGR RIKGSPPARG KEAKAQEPRI LCGVAVEDGS ICANPPPLGR 360 RRCHLHKGRR VR*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MGVAWRLGEG KDGKATKVSR VREEAVPVAN GCRLKREDCR RTKHDCAFSK WEILIGPSDW  60
ENYSLGKDGA ERYRTHNLPS SCSCPGIYEL GIARLSASSR RFDPKEIVVV YLGQAENVRT  120
RLQHYGRTGS HLEHGDSTVL QSKGISKAVQ RRPGFFKETF SKGFSIMFRW APMRSKREAL  180
DAEARLLEVF DYAWNRIGNA AYRYEDIIWK LDKLSRASLL HDFLTKLKPW NWKFPGRKQS  240
GIGITTSNGS LKSGDCPNDS KPNQVSAILE LDKSQRVSVQ RKNHPSVGCG GVCGVIKEDG  300
SVCERSPVSG RKRCGEHRGR RIKGSPPARG KEAKAQEPRI LCGVAVEDGS ICANPPPLGR  360
RRCHLHKGRR VR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026453295.1	1e-100	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A1D1ZJW7	1e-141	A0A1D1ZJW7_9ARAE; UvrABC system protein C (Fragment)
STRING	GSMUA_Achr8P21880_001	1e-105	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-76	effector of transcription2

Link Out ? help Back to Top
Phytozome	Spipo3G0049300