PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0062300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SRS
Protein Properties Length: 493aa    MW: 49924.9 Da    PI: 6.4999
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0062300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702196.96.6e-612524176154
          DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsst.klss. 93 
                     ++CqdCGn+akkdC+++RCRtCCksrgfdC thv+stWv+aa+rrer+   +a +   a  +     +++++k++r  +s+ q a+++t ++s+ 
  Spipo3G0062300 252 VTCQDCGNKAKKDCVYRRCRTCCKSRGFDCLTHVRSTWVSAAQRRERHISSSAGNDGGAVGEpgssaSTSTTKKPRLVSSNDQGAITNTaSTSNt 346
                     68*********************************************887777766555444565558888999999888877776655144441 PP

          DUF702  94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     +++++++etss          lP +v ++avf+cvrv+ ++dge+e+aYq++v i+Gh+fkG+LydqG++e
  Spipo3G0062300 347 TTPPRSFETSSsqqegsfregLPGQVTAPAVFKCVRVTNMEDGEDEFAYQAVVRISGHIFKGFLYDQGPAE 417
                     45567788877999******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.7E-57252416IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.4E-26253295IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.3E-27368415IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDEREGRADT LGTTGQSGRA GKQQQAARTA GSGRRRREAC CLESRTGRFP SDTGAFADWV  60
ASSATARGDD LCLGFNAGPG AGGGGSGSAA PTGGGGGLWA SAGGGRGPLN YGLADILVVA  120
PPSSFHSQQN QQHHPSESAA GMLSATDHPI IPLLTAAPCF VEDPDPTAAA AAAAAAAGGR  180
CRLSTGINLW QNQPPQQATT WVPQTSFPIS KPTAMPVLDS AGAAMAGVFG GALTGKTTMG  240
FGGGDGSLSS IVTCQDCGNK AKKDCVYRRC RTCCKSRGFD CLTHVRSTWV SAAQRRERHI  300
SSSAGNDGGA VGEPGSSAST STTKKPRLVS SNDQGAITNT ASTSNTTTPP RSFETSSSQQ  360
EGSFREGLPG QVTAPAVFKC VRVTNMEDGE DEFAYQAVVR ISGHIFKGFL YDQGPAEDTV  420
DAANDDAGGN SDTNNRIGGG IPNISELHLG GYGRGGGTAS DLYAAGLGDG LMGGKLMNLI  480
PGGTPEVVGP DS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A438KG411e-87A0A438KG41_VITVI; protein lateral ROOT PRIMORDIUM 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.29e-59Lateral root primordium (LRP) protein-related