PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0094800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 233aa    MW: 25150.1 Da    PI: 7.395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0094800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11135182455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  Spipo3G0094800 135 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQSLQ 182
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-16129191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-11129186No hitNo description
Gene3DG3DSA:4.10.280.103.2E-16131186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.355131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-11137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLGMHPGPGR MAPLGQKGVC GEGGGHREGA SGEEAAVSQQ SGGIRSRRKR RDLGTWSEEE  60
PSKLGSTCSG NESTDFESKR LKVGVSRDEN GESKPEVDTS SGVCNKLPGQ CAQTSEAPKQ  120
DYIHVRARRG QATDSHSLAE RARREKISER MKILQDLVPG CNKVIGKASV LDEIINYIQS  180
LQCQVEFGVQ AFEPPPRSAG YVGQPPTREF VGQESPQEWL HMQVGCGFER AA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923316.14e-73transcription factor BHLH089
SwissprotQ69WS36e-58BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A1D1YAT91e-91A0A1D1YAT9_9ARAE; Transcription factor bHLH79 (Fragment)
STRINGEOY202931e-69(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-49BIG PETAL P