PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo3G0103500

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

BES1

Protein Properties

Length: 107aa MW: 12285 Da PI: 10.2367

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo3G0103500	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	167	1.1e-51	2	103	1	101
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspessl 94 +g+gr+ptw+ErEnnkrRERrRRa+aaki++GLRa G+y+lpk++DnneVlkALcreAGw+ve+DGttyr+ s p+ ++ +a ++s + s+ Spipo3G0103500 2 TGGGRMPTWRERENNKRRERRRRAVAAKIFSGLRALGDYRLPKHCDNNEVLKALCREAGWIVEEDGTTYRQVSLPMiSRLRSAEMDCRRSDCCSV 96 689*************************************************************************9999999999999999999 PP DUF822 95 qsslkss 101 qs+++ s Spipo3G0103500 97 QSVPSIS 103 9655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	6.3E-48	3	104	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MTGGGRMPTW RERENNKRRE RRRRAVAAKI FSGLRALGDY RLPKHCDNNE VLKALCREAG 60 WIVEEDGTTY RQVSLPMISR LRSAEMDCRR SDCCSVQSVP SISAVRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-25	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-25	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-25	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-25	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009352718.1	6e-37	PREDICTED: BES1/BZR1 homolog protein 4-like
Swissprot	Q9S7F3	9e-29	BEH1_ARATH; BES1/BZR1 homolog protein 1
TrEMBL	A0A444FK93	2e-36	A0A444FK93_ENSVE; Uncharacterized protein
STRING	XP_009352718.1	2e-36	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5474	34	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50750.1	2e-30	BES1/BZR1 homolog 1

Link Out ? help Back to Top
Phytozome	Spipo3G0103500