PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0106400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 258aa    MW: 27686.1 Da    PI: 9.6119
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0106400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055164186123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C k+F+++  L  H  +H
  Spipo3G0106400 164 FECKSCRKTFPSHQALGGHRASH 186
                     89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.29E-81337No hitNo description
SMARTSM003550.271537IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8271542IPR007087Zinc finger, C2H2
PfamPF139125.8E-61537IPR007087Zinc finger, C2H2
PROSITE patternPS0002801737IPR007087Zinc finger, C2H2
SuperFamilySSF576672.29E-8159186No hitNo description
PfamPF139122.1E-9163188IPR007087Zinc finger, C2H2
SMARTSM003550.3164186IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702164191IPR007087Zinc finger, C2H2
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MLEDGGDQEG RKKKHTCKIC RRSFPCGRSL GGHMRSHGGG ASPPSPTPQR KQRTRGLAEA  60
GYGLRENPKK TRRVYESGAG IDDCQRREKL CGQEEADLAL CLMMLSRDAG FWGGGGGGRM  120
SWVKKTKEES GDSSDGSAAM DDLVKNPKGA LSKKRKSGVD GARFECKSCR KTFPSHQALG  180
GHRASHKRSS IRRCGGEAKV SAEFTPTSSA SPEEGSAAAV SPAVEAPAEH LDLDLSGPSS  240
EESEMWLTRR WQPLLNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146155PKGALSKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-12C2H2-like zinc finger protein