PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0109100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HD-ZIP
Protein Properties Length: 253aa    MW: 27535.1 Da    PI: 8.8169
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0109100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-18106160256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +k+ +++keq   Le+ F+++++++ ++++ LA+kl+L  rqV vWFqNrRa+ k
  Spipo3G0109100 106 KKKLRLNKEQSALLEATFKEHNTLNPTQKQTLARKLNLRPRQVEVWFQNRRARTK 160
                     677889***********************************************98 PP
2HD-ZIP_I/II120.96.6e-39106195191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLE +F+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+ +++l++en+rL+ke +eL+ +l
  Spipo3G0109100 106 KKKLRLNKEQSALLEATFKEHNTLNPTQKQTLARKLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKKYCESLADENRRLQKELHELK-AL 195
                     59*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.38E-1799163IPR009057Homeodomain-like
PROSITE profilePS5007116.682102162IPR001356Homeobox domain
SMARTSM003891.0E-14104166IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-16106160IPR009057Homeodomain-like
PfamPF000461.0E-15106160IPR001356Homeobox domain
CDDcd000861.46E-14110163No hitNo description
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PfamPF021832.7E-9162196IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.7E-17162205IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGEDPCDASL DLGLGLRGWT PTPSPSAARR RRKGPSGCTE DEPPATFATS AAAEPSLTLT  60
LSEDACRQST AGGDEKEAAR QSSPTSWSSK REKEAGSEEE EEGNGKKKLR LNKEQSALLE  120
ATFKEHNTLN PTQKQTLARK LNLRPRQVEV WFQNRRARTK LKQTEVDCEH LKKYCESLAD  180
ENRRLQKELH ELKALKSYMK LPAATTLTMC PSCERKGGGE MAKGGGAAAF VVRPKPHFCG  240
PFAAAHPPSA AC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154162RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021273528.14e-75homeobox-leucine zipper protein HAT22
SwissprotP466049e-64HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A061DHW37e-73A0A061DHW3_THECC; Homeodomain-leucine zipper protein HD4
STRINGEOX917921e-73(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-56HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]