PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0110400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GRF
Protein Properties Length: 176aa    MW: 18692.3 Da    PI: 10.9865
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0110400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.33.5e-2589133145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+
  Spipo3G0110400  89 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEA 133
                     79****************************************986 PP
2QLQ60.74e-211652137
             QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    ++FT++Q+ +L++Q+l+yKyL an+PvP++Ll++i+k
  Spipo3G0110400 16 GPFTPSQWLELEHQALIYKYLDANVPVPANLLVPIRK 52
                    59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.0E-121652IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-151751IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.1091752IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.63289133IPR014977WRC domain
PfamPF088791.2E-2190132IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKRKTMMHGV LAGVSGPFTP SQWLELEHQA LIYKYLDANV PVPANLLVPI RKSSLNSSGF  60
SSYAAAATMR TANSLGWGAF HAGFTGNADP EPGRCRRTDG KKWRCSRDAV ADQKYCERHM  120
NRGRHRSRKP VEAHSGHPPA KAAAAPPPPP SSSLAISGIG SSAGLGIAPA PQKNR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028065837.13e-72growth-regulating factor 1-like isoform X1
RefseqXP_028065838.13e-72growth-regulating factor 1-like isoform X2
SwissprotQ6AWY31e-57GRF6_ORYSJ; Growth-regulating factor 6
TrEMBLA0A1D1XFA33e-74A0A1D1XFA3_9ARAE; Putative transporter C36.03c
STRINGVIT_18s0001g08650.t012e-70(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-54growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu H, et al.
    OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
    Plant Physiol., 2014. 165(1): p. 160-74
    [PMID:24596329]
  3. Gao F, et al.
    Blocking miR396 increases rice yield by shaping inflorescence architecture.
    Nat Plants, 2015. 2: p. 15196
    [PMID:27250748]